Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121002g00005 ATGATACACCAATGGATGCCAAACAGAAACTTCTCATTGATCAAAACATTCCTTGATGGTGTAAGCAAGATATCTCCAAGGCTTGTTGTTCTGGTGGAGGAAGAACTCTTCAACTTTTCTAGGCTAAAATCCATGTCGTTTGTGGAGTTCTTCTGTGAGGCTTTGCACCACTACGCTGCACTGAGTGATTCACTTGCTAGTAGTTTGTGGGGTAGGCAGAAGATGGAGCTCTCCCTGATAGAGAAAGAGGTTATGGAGCAAAGGATTTTGGACAGTGTGAAGCAGTTTCCATGTGAGAGAGAAGAAAGAATGTTGTGGGAAGAAGGGTTTTACTCCTTAAAGGGGTTCAAGCGTGTTGCTATGAGTAGCTGTAATGTTTCACAGGCTAAGTTCTTGGTGAGCCTGTTTCGTGGAGGTTATTGGGTGCAATCTCAGGATTGTAGGTTGTCTCTGTGTTGGAAGTCAAGGCCTTTGACATCTGCTTCAACCTGGGTACCTACAGCGTACCACCGTTACTGA 519 0.447 MIHQWMPNRNFSLIKTFLDGVSKISPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYAALSDSLASSLWGRQKMELSLIEKEVMEQRILDSVKQFPCEREERMLWEEGFYSLKGFKRVAMSSCNVSQAKFLVSLFRGGYWVQSQDCRLSLCWKSRPLTSASTWVPTAYHRY 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121002g00005 172 Pfam GRAS domain family 13 164 IPR005202 -
Stsc121002g00005 172 ProSiteProfiles GRAS family profile. 1 165 IPR005202 -
Stsc121002g00005 172 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 13 161 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121002g00005 Stsc-Chr121002 17447 17965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121002g00005 8 164 GRAS Transcription Factor Family AT1G55580 33.742 4.18e-16 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc121002g00005 GRAS 1.8e-27 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121002g00005 - - ahf:112791141 298.901