LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121002g00004	ATGGAGTTCCTTGACGAAGACACGAGGCCGAGATTCCTATTCCAATCTGGATCACAGCCACCTCCTTCATCAGCCGATGAGCAATCTTACAACAAACCAACCAAGACAATACTCATCGTCACCGTCTCTGTCTCCGCCATCCTCCTCTTCCTCTCAATCTTCTACCTCCAATCTGAGCCATTCAAGTCACTCCTCCTCTGGCTCGCCCTCTCTCTCCTCCTTGGCCCTTTCGCCCCTCCTTCCCTCACCGCAGGCGACATCCGTGTAGGTCAGGGCTCCATCCTTGAATTCCCAGACCAGCAAACCCTCTCCGAAGATGATGACAACAAGAAGAATTACCAGCGCCGCTCCAAATCCCGCAGATCCGACGAAGTCCAATCTGTCGCCGCCGTTGTCGCTCCGGTTGTCAAATCGCCGGAGCGGGAGGCTGAGAAGATCCGCGTCATCGGAAACGGAAACGGCGTTGTGTCGGAGAAGGAGTGGAGCGAAGAGGACGTGGAGATTCTGAAGAAGCAGATGACGAAGCATCCCGTCGGGAAGCCAGGGCGGTGGGAGGCGATAGCGGCGGCGTTTGGTGGGAGGCACGGGGCGGAGAGCGTGATAAAGAAGGCTAAGGAGTTGGCGGAGAAGAAGGTGGACGATTCGGAGTCGTACGCGCAGTTCCTGAAGAAGAGGAAGCCGGTGGACAAAAGAGTGGTGGAAGAGGCCGCGGAGGAGGAGAATAACGGTGCTTCTGCTGCCATTGGAGACGGCGCGTGGAGTTCAGGCGAGGACATTGCGCTGCTGAATGCTCTGAAAGCATTCCCGAAGGAGGCTCCGATGAGGTGGGAGAAGGTGGCTGCTGCCGTGCCCGGGAAATCAAAGGGCGCTTGCATGAAGAGAGTTACTGAATTGAAGAAAGGGTTTCGGAATGCGAAAGCTGCTTCTGCCGATAAGGTAGAATAG	945	0.5619	MEFLDEDTRPRFLFQSGSQPPPSSADEQSYNKPTKTILIVTVSVSAILLFLSIFYLQSEPFKSLLLWLALSLLLGPFAPPSLTAGDIRVGQGSILEFPDQQTLSEDDDNKKNYQRRSKSRRSDEVQSVAAVVAPVVKSPEREAEKIRVIGNGNGVVSEKEWSEEDVEILKKQMTKHPVGKPGRWEAIAAAFGGRHGAESVIKKAKELAEKKVDDSESYAQFLKKRKPVDKRVVEEAAEEENNGASAAIGDGAWSSGEDIALLNALKAFPKEAPMRWEKVAAAVPGKSKGACMKRVTELKKGFRNAKAASADKVE	314

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc121002g00004	314	MobiDBLite	consensus disorder prediction	98	122	-	-
	Stsc121002g00004	314	SUPERFAMILY	Homeodomain-like	155	197	IPR009057	-
	Stsc121002g00004	314	SMART	sant	157	210	IPR001005	-
	Stsc121002g00004	314	SMART	sant	249	301	IPR001005	-
	Stsc121002g00004	314	CDD	SANT	252	299	IPR001005	-
	Stsc121002g00004	314	MobiDBLite	consensus disorder prediction	12	30	-	-
	Stsc121002g00004	314	CDD	SANT	160	194	IPR001005	-
	Stsc121002g00004	314	SUPERFAMILY	Homeodomain-like	248	299	IPR009057	-
	Stsc121002g00004	314	Gene3D	-	244	313	-	-
	Stsc121002g00004	314	MobiDBLite	consensus disorder prediction	103	122	-	-
	Stsc121002g00004	314	FunFam	Myb family transcription factor	249	307	-	-
	Stsc121002g00004	314	Gene3D	-	154	214	-	-
	Stsc121002g00004	314	MobiDBLite	consensus disorder prediction	1	30	-	-
	Stsc121002g00004	314	PANTHER	DNAJ HOMOLOG SUBFAMILY C MEMBER 2	121	308	IPR044634	GO:0006450\|GO:0030544\|GO:0043022\|GO:0051083
	Stsc121002g00004	314	ProSiteProfiles	Myb-like domain profile.	245	299	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121002g00004	Stsc-Chr121002	15631	16831	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Stsc121002g00004		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121002g00004	-		-	ahf:112791142	526.554