Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121002g00003 ATGAGTTTGGCGGGTACGGAAAGCTCCGAAGAGGGTGCAGGGCATCCAGAACCTCCCGATCCTGATGTTCTTGAAGTTGATCCTACTTGTCGCTACATTAGGTATAGAGAAGTCATCGGCAAAGGAGCCTTCAAAACTGTTTACAAGGCATTTGACGAAGTCAATGGAATTGAAGTTGCATGGAGCCAGGTTCAGATTGATGATGTGCTACAGTCACCAGGTGACTTAGAGAGGTTGTACTCAGAAGTGCATCTCCTGAGATCACTGAAACATGATAACATAGTAAGATTCTACAATTCCTGGATTGATGAGAAGCGCAAGACTGTTAACATGATTACTGAGTTGTTTACATCGGGCAGCCTCAAACAGTACCGGAGAAAACACAAGAAGGTTGACATAAAGGCTATTAAAGGATGGGCAAGACAGATATTGACGGGCTTAAGCTACCTCCACAGTCACAACCCACCAATTATACATAGGGACCTGAAGTGTGATAATATATTTATCAATGGTAATCAGGGAGAAGTTAAAATTGGAGATCTGGGGCTGGCAACTTTCTTGGAGCGAACTAATGCCAAGAGCGTTATTGCGGACATATATTCGTTTGGCATGTGCATGCTTCAGTTGGTGACTTCTGAATATCCTTATAGTGAATGCAGAAACTCAGCTCAGATATACAAGAAGGTTTCATCTGGTATAAAACCTGTTGCACTTTCTAAAGTCAAAGATCCAGAAGTAAAATCCTTTATTGAAAAATGTCTTGTCCCAGCATCTCAAAGATTGTCTGCAAGGGAGCTTCTGATGCATTCCTTTCTTGACTTGAATGGTTCAACAAGGATTCATCCTTTTCCATTACCAGATATTGTTCTTCCCAAATTTGGAGCCTTCGAAAGCCGATGCTTAATGTCAGAAGGTCCTAGTAGTGCACGTAGTGGAAATATTTCTTTGGATCTTGGTGGCATGAGCGAACTACCCGTGATCACTGTATTTGATAACTCTACAGATGATGCATCATCGTCTCATTGCCCATCTGTTGAGATAAGAATGTCAAACAGAGATGACATATTCTTTCTGAAAGGCCATGAAAATGATAAGAATTCCGTATCATTGGTTCTCCGGATAGCTGATGTGAGTGGAAGGGCAAGAAATATCCATTTTATATTCTATCTTGACACTGATACTGCTGTCTCGGTTTCAAGTGAAATGGTTGAACAACTTGAGCTTGCTGAACAAAATGTCCTTTTCATAGCCGAGTTAATAGATTTGTTATTGCTGAAGTTGGTTCCTGACTGGGAACCCTGTGTTTCAATTGACCATTTGGTTTCTCCAAATGGCAAATATCATGTGACCCAACATAGAGCCTTGGAGTCGGCAAAATACCAAGAAAGCCCAAAACTTGCCAGCCAAATTGTGCCTCAAGAGTTAGGTGCCTCAACCTCACCTGGAAGATCAGTTGCAAAAGAGAACCATGATAATATGGAATTTGATGAGGTTGTATCTGAAGAGAGCATTGGTATCCAAAGAGCAACTAAGACAGATGATCTATGTTCCGAGGTGTCATATGCTTCAGCATCGTCAGAATTAAATGATAACAAGTTTTCCGTAGCTTCATTTATGTCTTCTACTGAATCAGGACTAGCAGACTTAAACATAACTATACCGAATGGAGGGAGTCAATCCTCATTTGCATCCGAAATTGTGGCATCTCCTGATTATAGGATCAAGTATTCAGAAATGGGAAGTGATGATACGATGAGCTTCTCTACTCATCCCATTAGTGTTTCCTCCGTGTCTGAACATGAGGATGAATTCAGAACGGAGCTAGAAATGATTGAACAGAAGTATCAAGATGCGATTAAAGATTTTTCAAGAAGAAGATACCAAGCCGTCGTCGAGATTAGAAGGAGAATGTCAGAAAAGATGTTATCATCATCATCATCGTAG 1944 0.4095 MSLAGTESSEEGAGHPEPPDPDVLEVDPTCRYIRYREVIGKGAFKTVYKAFDEVNGIEVAWSQVQIDDVLQSPGDLERLYSEVHLLRSLKHDNIVRFYNSWIDEKRKTVNMITELFTSGSLKQYRRKHKKVDIKAIKGWARQILTGLSYLHSHNPPIIHRDLKCDNIFINGNQGEVKIGDLGLATFLERTNAKSVIADIYSFGMCMLQLVTSEYPYSECRNSAQIYKKVSSGIKPVALSKVKDPEVKSFIEKCLVPASQRLSARELLMHSFLDLNGSTRIHPFPLPDIVLPKFGAFESRCLMSEGPSSARSGNISLDLGGMSELPVITVFDNSTDDASSSHCPSVEIRMSNRDDIFFLKGHENDKNSVSLVLRIADVSGRARNIHFIFYLDTDTAVSVSSEMVEQLELAEQNVLFIAELIDLLLLKLVPDWEPCVSIDHLVSPNGKYHVTQHRALESAKYQESPKLASQIVPQELGASTSPGRSVAKENHDNMEFDEVVSEESIGIQRATKTDDLCSEVSYASASSELNDNKFSVASFMSSTESGLADLNITIPNGGSQSSFASEIVASPDYRIKYSEMGSDDTMSFSTHPISVSSVSEHEDEFRTELEMIEQKYQDAIKDFSRRRYQAVVEIRRRMSEKMLSSSSS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121002g00003 647 Gene3D Transferase(Phosphotransferase) domain 1 116 195 - -
Stsc121002g00003 647 Gene3D Transferase(Phosphotransferase) domain 1 196 277 - -
Stsc121002g00003 647 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Stsc121002g00003 647 CDD STKc_WNK 31 272 - -
Stsc121002g00003 647 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 20 631 - -
Stsc121002g00003 647 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Stsc121002g00003 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Stsc121002g00003 647 Coils Coil 601 621 - -
Stsc121002g00003 647 Gene3D - 366 432 - -
Stsc121002g00003 647 SUPERFAMILY Protein kinase-like (PK-like) 35 273 IPR011009 -
Stsc121002g00003 647 ProSiteProfiles Protein kinase domain profile. 33 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121002g00003 647 SMART serkin_6 33 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121002g00003 647 Pfam Protein kinase domain 36 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121002g00003 647 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121002g00003 Stsc-Chr121002 12015 14830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121002g00003 7 441 MAP Kinase Kinase Kinase AT3G18750 60.780 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Stsc121002g00003 Pkinase 2.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121002g00003 K08867 - gmx:121175054 798.119