Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121000g00009 ATGGAAGCTAGTTTGGAATGCCAAAGTGTTCTAGACTTTCCTGCAACACAAATGGTGCATGAGCAACTTTGGGTGGATAAATATTCACCAAAGTCATTTACTGAGCTTCTTAGTGATGAACAAACAAATCGTGAGGTACTCTTGTGGTTAAAACAATGGGACTCTGTTGTTTTTGGATCTGAAATTCGAAGTACATCAGATGATGTTTTGTCTGCTTTGAAGCGTCATTCTTCTGTTGCCCATAATCACCGACATTCTTCTGTTGCCCAAAATCAGCGACCTTTCAATTCAAAGTTTTCAAGGATAAACAGAGGCAACAAATGGAGTAGTGGGAGGTATAAAAATTCAAGAACTGTGGATGAGAGTGCTAATTCAAAGGGCATTGAGGATATACTGAATACAAGGGCAACCAATGTTGGTCCACCAGAACAGAAGATTCTTCTGCTCTGTGGATCACCTGGTCTTGGAAAAACAACACTTGCCCATGTAGCTGCCAGGCATTGTGGATATCATGTAGTGGAGGTTAATGCCAGTGATGATCGTTCTACATCAACAATTGAACCCAAAATCCTTGATGTTGTTCAAATGAACTCTGTCTTGTCTGATTCGAGGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGTGAAGGCAAGGGTGCTGTGGACGTTCTTTTGAAGATGGTTTCTGGTGAAACAAAGTCTGATGCTGGAAGGCAAAGTTTGGGGAAAGATCTAGGAAAGAAATCGTCAAAGAAGGGCCGGAAAACAGCCACATTATCAAGACCTGTAATTTGCATTTGTAATGATTTATATGCACCTGCCTTAAGACCATTACGTCAGATAGCCAAGGTTCATATATTTGTTCAGCCAACAGTTGGTCGTGTGGTGAGCAGGCTTAAATATATATGTAACAAGGAGGGAATGAAAGCTAGTGCTATTGCGCTCACTGCTCTAGCAGAATACACAGAATGTGATATACGCTCATGCTTGAATACTCTGCAATTTCTCTCAAAGAAAAAGGAAACCCTCAATATGTTTGATTTAGCTTCTCAAGTAGTTGGCCAGAAGGACATGTCAAAGAATGTTATTGACATATGGAAGGAGATTTTCCATAGGAAAAGAAGAAAGTTGGACAGAAACTCACCTAAAAGCAAGTCTTTTGAATTTGATTCCTTGTACTCCTTGATATCAAACCGAGGTGATAGTGACTTGATTCTGGATGGAATTCATGAAAATATTTTGCATCTCAATTATCATGATCCAGTGATGCAGAAAACTGTCAAGTGCTTCAATGGTCTTGGAGTTTTTGATCTATTGCATAAATTCATATGGCGTACACAACAAATGCCCCTTCATGTATATTTGCCGCCCGTAGCAATTGGTGTACATCATATAGTAGCTCAAGTTCGGAAGCCAAACATTGAGTGGCCAAAATCTTATCAAAGGTATCGGACAATGATGTCCGAGAAGATTGATATTTTGAATACTTGGCACTACAAAGTCCCACCACATATTGCAAGGCACCTATCGGCTAGTTGCATTGTTGAGGATATAATTTCTCCATTGTTGCATATTCTGTCTCCGCCAACTATAAGACCGGTGGCACTACATCTCCTATCTGAAAAGGAGAAGAATGATTTTGCTCAACTAGTTAGCACAATGGTCTCTTACTCTATAACATACAAGACTACAAAGTCAGAAATTCTGCCTAATCACCTAAGGCATGAAGTAGCAGATGACGTGGCTCTGTCTCTTGTTCCCCCAATCACTGACTTCATAAACTTTCAGGACTATGCCTCCAATCATCACACCCTTTCATTACCTATGAAGAAGGTTTTGCTCCATGAAGTTGAAAAACAGAGAATCTTGCAAGTCACAAAGGGAGGGGATGAAGTTTATTCTAGTGGAACTATCAGTGCTCAATCAACCAATGCTAACCATGGAGGCGCAGTTGATAAGAAAACCACTGAAACAAATACTAACATTTTAGCGAGGCAGTTAAATGCAAATCCCAAAACAGATTCGCCAAAGTCAAATCTCAATAATGTTCCAAGTGTTGTAGACAATGCAAAACTGCCAAACACGGGAAAGAAGAAAAAGCCATCTAATGGTTTTTCAAGTTTCTTTGACAGGTTTAAAAAGCCAAGTGTTAAAGGCTTCAAAAGCAATGATGGCTCTCTGCAAAAAGAAGAAACCTTGGAAAAGGACCCATTCCCTTTACTTTTTAAGTTTAATGAGGGCTTTACGAATGCGGTGAAAAGACCTGTCCGGATACGTGAATTTCTATGTTGA 2301 0.4003 MEASLECQSVLDFPATQMVHEQLWVDKYSPKSFTELLSDEQTNREVLLWLKQWDSVVFGSEIRSTSDDVLSALKRHSSVAHNHRHSSVAQNQRPFNSKFSRINRGNKWSSGRYKNSRTVDESANSKGIEDILNTRATNVGPPEQKILLLCGSPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIEPKILDVVQMNSVLSDSRPKCLVVDEIDGALGEGKGAVDVLLKMVSGETKSDAGRQSLGKDLGKKSSKKGRKTATLSRPVICICNDLYAPALRPLRQIAKVHIFVQPTVGRVVSRLKYICNKEGMKASAIALTALAEYTECDIRSCLNTLQFLSKKKETLNMFDLASQVVGQKDMSKNVIDIWKEIFHRKRRKLDRNSPKSKSFEFDSLYSLISNRGDSDLILDGIHENILHLNYHDPVMQKTVKCFNGLGVFDLLHKFIWRTQQMPLHVYLPPVAIGVHHIVAQVRKPNIEWPKSYQRYRTMMSEKIDILNTWHYKVPPHIARHLSASCIVEDIISPLLHILSPPTIRPVALHLLSEKEKNDFAQLVSTMVSYSITYKTTKSEILPNHLRHEVADDVALSLVPPITDFINFQDYASNHHTLSLPMKKVLLHEVEKQRILQVTKGGDEVYSSGTISAQSTNANHGGAVDKKTTETNTNILARQLNANPKTDSPKSNLNNVPSVVDNAKLPNTGKKKKPSNGFSSFFDRFKKPSVKGFKSNDGSLQKEETLEKDPFPLLFKFNEGFTNAVKRPVRIREFLC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121000g00009 766 MobiDBLite consensus disorder prediction 670 692 - -
Stsc121000g00009 766 CDD HLD_clamp_RFC 293 348 - -
Stsc121000g00009 766 Gene3D - 293 363 - -
Stsc121000g00009 766 CDD AAA 142 245 - -
Stsc121000g00009 766 FunFam Chromosome transmission fidelity protein 18 293 360 - -
Stsc121000g00009 766 MobiDBLite consensus disorder prediction 670 710 - -
Stsc121000g00009 766 Pfam ATPase family associated with various cellular activities (AAA) 147 272 IPR003959 GO:0005524|GO:0016887
Stsc121000g00009 766 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 765 - -
Stsc121000g00009 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 350 IPR027417 -
Stsc121000g00009 766 Gene3D - 21 291 IPR027417 -
Stsc121000g00009 766 MobiDBLite consensus disorder prediction 237 257 - -
Stsc121000g00009 766 SMART AAA_5 143 296 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121000g00009 Stsc-Chr121000 55880 66616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121000g00009 144 340 Core DNA Replication Machinery Family AT5G22010 29.245 2.77e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121000g00009 K11269 - gmx:100785041 1131.32