Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120997g00001 ATGTCTCTAAGGAAGGTGTTCCGCTCGCGGAAATTCTCGAAATCGTTCATGGATGTTAACGCCGCCGTGGCTCCTGCCCTCGAGGGAGGGGAAAAGAAGGAGGAGGCAGGGGAAGACGGGAATGCGTGGTCGGGGATGTTGCCGGAGCTTCTGAGAGAGATTATAAGGAGGGTGGAGGTGGAGGAGGAGCAGTGGCCGCAGCGGCAGAACGTCGTGGCCTGCGCCTGTGTCTGTAAGCGGTGGAGGGACATAGCTCGTGAGATCGTTTCAGAGCCTCAAAATAACGGCAAAATCACTTTTCCTTCGTGTCTTAGGAAGCCAGGTCCACGTGAACTTCCCAACCAGTGTCTGATAAAGCGAAACAAGAAGACCTCAACATTTTATCTATATCTTGCCTTAACACCATCATTCACAGACAAAGGGAAGTTTTTGTTAGCGGCTAGAAGATACAGGTGTGGTACCCATACTGAATATATAATATCACTTGATGCTGAGGACTTATCGCAAGGAAGCAATGCTTATGTTGGAAAATTAAGCTCGGATTTTCTTGCTACCAACTTCACAATATACGACAGTCAACGACCACACGCTGGTGCAAAACCATCAAGTGGCAGGTCTAGTCGCCGTTTTGCCAGCAAACAGATAAGCCCTCAAGTTCCTGCCGGTAACTTTGAAGTGGGTCAGGTCTCCTACAAGTTCAACCTCTTGAAATCAAGAGGGCCAAGGAGGATGGTCTGCTCGCTCAAGTGTCCCACCACACCATCGGGAGAAACTTCAGATATCACATCACCGGAGAGCGACAAGACACAAAGTAAAGATCAAGCCGCTCCTACCTGTACAATCTTGAAGAATAAGGCACCACGGTGGCACGAGCATTTGCAGTGCTGGTGCTTGAATTTTCATGGCCGTGTGACAGTAGCATCCGTGAAGAACTTTCAGCTGGTTGCTACGGTGGACCAGAGCCAACCGGGAGGCAAAGGAGACGAGGACACGGTTCTCCTGCAGTTTGGCAAAGTGGGGGATGATACTTTTACCATGGATTATAGGCAGCCCTTATCAGCTTTTCAGGCATTTGCCATTTGCTTGACTAGCTTTGGCACTAAACTGGCATGTGAGTAA 1119 0.4951 MSLRKVFRSRKFSKSFMDVNAAVAPALEGGEKKEEAGEDGNAWSGMLPELLREIIRRVEVEEEQWPQRQNVVACACVCKRWRDIAREIVSEPQNNGKITFPSCLRKPGPRELPNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDAEDLSQGSNAYVGKLSSDFLATNFTIYDSQRPHAGAKPSSGRSSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPTTPSGETSDITSPESDKTQSKDQAAPTCTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEDTVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120997g00001 372 MobiDBLite consensus disorder prediction 194 214 - -
Stsc120997g00001 372 MobiDBLite consensus disorder prediction 248 274 - -
Stsc120997g00001 372 ProSitePatterns Tub family signature 1. 300 313 IPR018066 -
Stsc120997g00001 372 MobiDBLite consensus disorder prediction 251 274 - -
Stsc120997g00001 372 ProSitePatterns Tub family signature 2. 357 372 IPR018066 -
Stsc120997g00001 372 SUPERFAMILY F-box domain 41 87 IPR036047 GO:0005515
Stsc120997g00001 372 PANTHER TUBBY-RELATED 39 370 - -
Stsc120997g00001 372 Pfam Tub family 104 367 IPR000007 -
Stsc120997g00001 372 Gene3D Tubby Protein; Chain A 99 372 IPR025659 -
Stsc120997g00001 372 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Stsc120997g00001 372 PRINTS Tubby superfamily signature 282 299 IPR000007 -
Stsc120997g00001 372 PRINTS Tubby superfamily signature 350 372 IPR000007 -
Stsc120997g00001 372 PRINTS Tubby superfamily signature 329 348 IPR000007 -
Stsc120997g00001 372 PRINTS Tubby superfamily signature 300 316 IPR000007 -
Stsc120997g00001 372 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Stsc120997g00001 372 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Stsc120997g00001 372 Pfam F-box domain 44 89 IPR001810 GO:0005515
Stsc120997g00001 372 SUPERFAMILY Tubby C-terminal domain-like 94 372 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120997g00001 Stsc-Chr120997 3051 7227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120997g00001 1 372 TUB Transcription Factor Family AT1G53320 70.976 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc120997g00001 Tub 1.3e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120997g00001 K19600 - gmx:100808096 610.527