Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120996g00016 ATGTTTCTTGACCAGAAATATCACCTGATGTTGTTGTGTTTCTTCCTAGCTTTGCTTCCATTTGCAACTGTTGCTCAAAGCCATAAAAACATTTCACTGGGTTCTTCCCATACTGCTGAAGCAGGTAATTCCATTTGGGCAGTATCACCATCTGGTAACTTTGCATTTGGTTTCCAACAGATTCAGGAGAACGGCTTCTTGCTTTCCATTTGGTTCAACCAAATACCTGAAAAAACTGTTGTTTGGTCAGCCAATGGAGGAAACCTTGCACCAAAAGGTTCCAAAGTTGAGCTTACCAAAGATGGCTCTCTCTTGCTCAATGATCCCACCGGCAGACAGATATGGTCCCCTGGTTCCTCCGGCGTTGAAACATCTTATGCAGCCATGCTTGATACCGGCAATTTTGTGCTTGCAAGTCAAAGCTCTGAGTACTTATGGCAAAGTTTTGATCATCCCACTGACACAATCTTACCAGGACAGGTTCTAAATCAACCTAGTACTCTTGTTTCTAGATATTTGGAAACAAATTACTCAAGTGGAAGATTTCAGTTTGTATTAAAAGGTAATGGAAATCTTGTACTTTACACCACACATTATCCAACGAACGCTCCAAATTTTGCTTATTGGACCACACAGAAGTTTGGCAATGGCTTCTCATTAGTCTTCAATCAATCTGGGGTTCTTTTCCTTCAGGCAAGCAATGGAAGCATAATCAGCATGATATCATCAAGTACTTCCCCCACAAAAGATTTCTACCAGAGAGCAGTGCTTGAGTACGATGGAGTTTTCAGGCATTATGTCTACCCTAAGAGCAGTAGCTCCAATACAGGAAGCTTGCAGATGGCATGGTCAACTGTTGATTTCTTACCATCAAATATCTGCTCGGATATTCGTGAAGATTTTGGAAGTGGAGCTTGTGGATTCAACAGTTATTGCATGTTTGATGGTGGGATAAAGAGTTGCTATTGTCCATATGGATATAGCTTCATTGATCCAGATGATGTGATGAAAGGATGCAAACCGGACTTTGATTCACAAAGTTGTGATGGATCTTCCCCAGAAACAGATCTTTTTTATTTCCATGAGATGGAAAACACAGATTGGCCTCTGACAGATTATGAATATTTTAAGCAAGTGAATGAGGACTGGTGCAAACAGGAGTGCTTGAGTGATTGTTTCTGTGCTCTTACCATTTTGGGAAGTAATGAGTGTTGGAAAAAGAAGTTACCCTTCTCCAATGGAATGCAAGATTCCACTGTTCAAAGAAAAGCTCTGTTAAAGATAAGAAAAGACAACTCTACCTCCAAATGTGAGGGTCCAGTGAGAAAGAAAGATCAATCTAAGCTGATTATGGTTATCTCTGTGCTTCTAAGCAGTTCAGTGTTACTGAACTTGCTCCTATTAGTGGCGGGTTTTTCAGTTGTATACTGGTGGAGATCCAAGAGTTCTAAGCCAAATCAATCTAGCCAAGCCATTGTAGAAACTTGTCTTAGAAGTTTCACTTTTGAAGAGTTGAGGAAGGCAACAAATGAGTTCAAGGAAGTTCTTGGTCAAGGGGCATTTTCAACCGTCTACAAAGGAGTTTCATTTGATCATACCAGGAACCACATTGCAGTTAAGAAGCTGAACAACATGGTCAAAGAAAATGAAGAAGAGTTCAAAACAGAGGTAAGTACATTTAGTAGGACAAATCATAGGAATTTAGTCCAACTCTTGGGATTCTGCAATGATGGAGAACACAGAATGCTTGTATATGAGTTCATGAGCCAAGGTTCTTTGGCAAGCTTCCTTTTTGACACCAGTGAAAGGCCAAGTTGGTCTCAGAGAATGCAGATAGCATTGGAGACAGCTAGGGGAATCTTGTATCTGCATGAAGAGTGTAGCACTCAGATCATACATTGTGACATTAAACCTCAAAATGTTTTGCTTGATGAATCTTTCACTGCTAAGATATCTGACTTTGGCTTAGCCAAACTCTTGAAAATTGGTCAATCTAGAACCAATACAGGGATAAGGGGAACCAAAGGGTATGTTGCTCCTGAGTGGTTTAGAAACATGCCAATCACCATCAAGGTTGATGTCTACAGCTATGGAGTACTATTACTTGAGATCATTTGTTGCAGGAGAAGCTTTGAAGCAAATGCTGAGAATGAGAACCAGATGGTGCTGACAGATTGGACCTATGATTGCTTTCATGAAAGGAAACTTGATTTGTTGGTGGAAGGTGACAATGAGGCCTTAGATGAGATGAAGATGGTGGAAAAGTATGTGATGGTTTCTCTATGGTGCATTCAGGAGGATCCATCACTGAGGCCAACCATGAAGAAAGTGTTGCAGATGCTTGAAGGGTCTGTAGATGTAGCAACCCCTCCTGATTTACCTTCATTCACAACTACCATGTGTCTGTAG 2409 0.4081 MFLDQKYHLMLLCFFLALLPFATVAQSHKNISLGSSHTAEAGNSIWAVSPSGNFAFGFQQIQENGFLLSIWFNQIPEKTVVWSANGGNLAPKGSKVELTKDGSLLLNDPTGRQIWSPGSSGVETSYAAMLDTGNFVLASQSSEYLWQSFDHPTDTILPGQVLNQPSTLVSRYLETNYSSGRFQFVLKGNGNLVLYTTHYPTNAPNFAYWTTQKFGNGFSLVFNQSGVLFLQASNGSIISMISSSTSPTKDFYQRAVLEYDGVFRHYVYPKSSSSNTGSLQMAWSTVDFLPSNICSDIREDFGSGACGFNSYCMFDGGIKSCYCPYGYSFIDPDDVMKGCKPDFDSQSCDGSSPETDLFYFHEMENTDWPLTDYEYFKQVNEDWCKQECLSDCFCALTILGSNECWKKKLPFSNGMQDSTVQRKALLKIRKDNSTSKCEGPVRKKDQSKLIMVISVLLSSSVLLNLLLLVAGFSVVYWWRSKSSKPNQSSQAIVETCLRSFTFEELRKATNEFKEVLGQGAFSTVYKGVSFDHTRNHIAVKKLNNMVKENEEEFKTEVSTFSRTNHRNLVQLLGFCNDGEHRMLVYEFMSQGSLASFLFDTSERPSWSQRMQIALETARGILYLHEECSTQIIHCDIKPQNVLLDESFTAKISDFGLAKLLKIGQSRTNTGIRGTKGYVAPEWFRNMPITIKVDVYSYGVLLLEIICCRRSFEANAENENQMVLTDWTYDCFHERKLDLLVEGDNEALDEMKMVEKYVMVSLWCIQEDPSLRPTMKKVLQMLEGSVDVATPPDLPSFTTTMCL 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120996g00016 802 CDD STKc_IRAK 516 783 - -
Stsc120996g00016 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 210 IPR036426 -
Stsc120996g00016 802 Gene3D Transferase(Phosphotransferase) domain 1 588 793 - -
Stsc120996g00016 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Stsc120996g00016 802 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 40 793 - -
Stsc120996g00016 802 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 789 - -
Stsc120996g00016 802 Pfam Protein kinase domain 512 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120996g00016 802 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 25 150 - -
Stsc120996g00016 802 PIRSF SRK 1 801 IPR024171 GO:0004674
Stsc120996g00016 802 SMART serkin_6 510 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120996g00016 802 Gene3D Phosphorylase Kinase; domain 1 473 587 - -
Stsc120996g00016 802 SUPERFAMILY Protein kinase-like (PK-like) 485 782 IPR011009 -
Stsc120996g00016 802 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Stsc120996g00016 802 SMART blect_4 30 152 IPR001480 -
Stsc120996g00016 802 FunFam Serine/threonine-protein kinase 153 297 - -
Stsc120996g00016 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 174 272 IPR036426 -
Stsc120996g00016 802 ProSitePatterns Protein kinases ATP-binding region signature. 516 541 IPR017441 GO:0005524
Stsc120996g00016 802 Gene3D - 26 151 IPR036426 -
Stsc120996g00016 802 Pfam D-mannose binding lectin 79 163 IPR001480 -
Stsc120996g00016 802 Gene3D - 152 276 IPR036426 -
Stsc120996g00016 802 FunFam S-receptor-like serine/threonine-protein kinase 479 587 - -
Stsc120996g00016 802 ProSiteProfiles Protein kinase domain profile. 510 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120996g00016 802 CDD B_lectin 32 152 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120996g00016 Stsc-Chr120996 54817 57296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120996g00016 477 783 Receptor kinase-like Gene Family AT1G60800 41.875 7.30e-72 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc120996g00016 Pkinase 2.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120996g00016 - - aip:107638596 1387.86