Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120996g00003 ATGGAAAACTTCATCATGTCTTCGTCTTCATCTTCGTCTTCAGCTTCACCTCCTTCATCATCGCACATTTCAGGTGCAGCTTTTGATGACTATTCCGAGGACTTCTGCAGCATTTGTTTGGAGCCATTTAGCATCAATGACCCGTCTACTATTACTTCTTGCAAACACGAATATCATCTGCACTGTATTCTTGAATGGTCAGAGAGAAGCAGAGAATGCCCAATATGTTTGCAGCTGCTTTCTTTAATTGATCCTTCTAGCCAAGAGCTTCTTGCTGCAGTGGAGGCTGAAAAATGTTCAAGGTCAAGAAACATATATCCATCTTCATTCATTAGTTCTCATATTCCCCATGAACAGCTCAATTATGACTATGGCGATTCTTACTCAGATGAGTCTGATATTGATGATCAAATTATGCAACACCTAGTTGCTGCTTCCAGAAGATCTCGTTTCCTCCATAGACGGGAAAGGCAAAGAGCTTCTAGTGCAGGTCCGTCCGAGGTTCTTGTTTCCAACGCTCCTATGCATGTGTCTGTCATGCAACCAACACTCCCCACTTCACCCATGGGCAGTAGTTCACCAACTTCTGGTGTAGCATCTGCTGTTGAGACTCAACATCCAGCATCTGCATTTTCTCCGGTTGCTGAAGTTGCAAGAAATGCTAATGCTGAGAATGATGTTCCTTTTAAACCCAGAGTTCTCTATACCCAGCCACCATCCGAGAGTGGAAGGAGACTAAATACTCCTGAGATGTTCTCTATCCCGGAGTCCTTTAAATCCAAATTTTCTGCTGCTTCGGCCAAGTATAAGGAGTCAATAACCAAAAGCACACGTGGCCTTAAAGAGAAGTTACTTGCTCACAATGCCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCGGGAATTGCTGGTGTTGCACGGATGATCGAACGCCTTGATCTTTCCTCAAAGCGATCTAATTCTCCTCCTGCTCCTGTCGGCACTGGGGAAAGTTCGGGATCCCCTGTAAAAGGAAAGTCAGTCGATGAGGATGACAGTGACACTGGGCGTTCTCCTAGTATATACACTGAAAATGTGGTTCAAAATGTCAGTTCAGATGCTCCCTCAGTATCTAGTGGCATGGTTGTTGGTCGAGTGGTTGCTGGTCGGGTGGAAATTCATCATCGTGTTCAGAGTGGAAATGATGCTGCTGTGAGGATATAG 1215 0.4477 MENFIMSSSSSSSSASPPSSSHISGAAFDDYSEDFCSICLEPFSINDPSTITSCKHEYHLHCILEWSERSRECPICLQLLSLIDPSSQELLAAVEAEKCSRSRNIYPSSFISSHIPHEQLNYDYGDSYSDESDIDDQIMQHLVAASRRSRFLHRRERQRASSAGPSEVLVSNAPMHVSVMQPTLPTSPMGSSSPTSGVASAVETQHPASAFSPVAEVARNANAENDVPFKPRVLYTQPPSESGRRLNTPEMFSIPESFKSKFSAASAKYKESITKSTRGLKEKLLAHNASVKELSKGVQREMNAGIAGVARMIERLDLSSKRSNSPPAPVGTGESSGSPVKGKSVDEDDSDTGRSPSIYTENVVQNVSSDAPSVSSGMVVGRVVAGRVEIHHRVQSGNDAAVRI 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120996g00003 404 SMART ring_2 36 76 IPR001841 -
Stsc120996g00003 404 MobiDBLite consensus disorder prediction 355 375 - -
Stsc120996g00003 404 SUPERFAMILY RING/U-box 28 83 - -
Stsc120996g00003 404 MobiDBLite consensus disorder prediction 318 375 - -
Stsc120996g00003 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 81 IPR013083 -
Stsc120996g00003 404 Pfam Ring finger domain 36 76 IPR001841 -
Stsc120996g00003 404 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Stsc120996g00003 404 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 18 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120996g00003 Stsc-Chr120996 13378 16317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120996g00003 20 76 C3H Transcription Factor Family AT4G00335 47.368 1.09e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120996g00003 K19043 - qsa:O6P43_003413 379.022