Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120995g00006 ATGATGAACTTTGTTGATGAGAAGAAGAAGAAGAATAATAATGGAGTGAGATTATTGCCACCTGGTTTTCGGTTCCAACCAACAGAAGAAGAGCTTCTATTTCAGTATTTGAAGTGCAAGGTTTTCTCTTTTCAGTTGCCAGCTTCAATCATTCCTGACATCAATGTATGCAACTATGATCCTTGGGATTTGCCAGGGAATAATAATTGTGATGAGGAAGAAGAGAGATACTTGTTCAGCTCAAAGGAAGTGAAGTATAGAAATGGTAACAGAATGAAGAGAACAACCAAATCTGGATATTGGAAAGCAACTGGATCAGACAAAAGAATAGTTTCAACATCATCATCATGCAATAATAATAATATTGTTGGGATAAGAAAAAGTCTTGTATTCTATCATGGAAAATCTCCAAGTACTGCCTCTAGAACTCATTGGATCATGCATGAATATCGTCTCGTCACTACTCCTTCCAATTCATCTTCCCAGAAGTATGTAGAAGACTTAGGGGATTGGGTTCTTTGCCGGATATTCATGAAGAATAATAAAAGAAGCATAGAAAGCCATCATCATCATCATCACATGGTGAAGAAATTTAATAATAATGTAGTGATGATGAAAAATAATAATAATAATAATAATCATGTTGTGGAGGTGGCTAATAATAAGCCAATATTATTCTTTGATTTTATGAGGGTACATAACTCATCACCAATATCTTCATCCAATCCTATCATCCATTTTCCTTCTAAATCTTCATCATCATCTTCTTGTTCAAGTTCTAGTTTCATAACTGAGGTGTCTTCACCAGATAACAATCATGAAGGAAAAAGTGATTATTATGTATGA 846 0.3416 MMNFVDEKKKKNNNGVRLLPPGFRFQPTEEELLFQYLKCKVFSFQLPASIIPDINVCNYDPWDLPGNNNCDEEEERYLFSSKEVKYRNGNRMKRTTKSGYWKATGSDKRIVSTSSSCNNNNIVGIRKSLVFYHGKSPSTASRTHWIMHEYRLVTTPSNSSSQKYVEDLGDWVLCRIFMKNNKRSIESHHHHHHMVKKFNNNVVMMKNNNNNNNHVVEVANNKPILFFDFMRVHNSSPISSSNPIIHFPSKSSSSSSCSSSSFITEVSSPDNNHEGKSDYYV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120995g00006 281 MobiDBLite consensus disorder prediction 250 281 - -
Stsc120995g00006 281 Gene3D NAC domain 28 185 IPR036093 GO:0003677|GO:0006355
Stsc120995g00006 281 PANTHER NAC TRANSCRIPTION FACTOR 56 19 230 - -
Stsc120995g00006 281 SUPERFAMILY NAC domain 17 179 IPR036093 GO:0003677|GO:0006355
Stsc120995g00006 281 ProSiteProfiles NAC domain profile. 19 179 IPR003441 GO:0003677|GO:0006355
Stsc120995g00006 281 MobiDBLite consensus disorder prediction 250 274 - -
Stsc120995g00006 281 Pfam No apical meristem (NAM) protein 20 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120995g00006 Stsc-Chr120995 39482 41693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120995g00006 14 238 NAC Transcription Factor Family AT5G13180 48.052 6.22e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc120995g00006 NAM 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120995g00006 - - aprc:113868555 267.7