Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120995g00003 ATGGGTTGCGTGTTCGGGAAGCCGGCCGGTACCGAAGCTCATCGCCGTCGCCGGAGCAAACAGAGAAGCTCTGCTGGCGATGCAAGTGATAATAATGATGCTAGTAATGCCGTTAGGGTTCGGGAGAAGCAGAGGAACCGCCGGAACTCCACCGGTGATGTTCCGGTAAGCCTTCCGGCGCCGGAACGCCGGAAACCGAGGCTCGATCCGTTCGCGGTTACTCAGCAGGGATGGCCGTCGTGGCTTATGGCCGTCGCCGGCGAAGCCATCGGCGATTGGACTCCTCGCCGCGCCAACACCTTTGAGAAGCTCGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTATAAAGCAAGGGACCTTTTGAGTGGGAAGATTGTGGCTTTGAAGAAAGTTAGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCTAGAGAGATTCTTGTTCTGAGAAAGCTTGATCATCCAAATGTTGTGAAGCTTGAGGGTTTGGTCACTTCAAGAATGTCTTGCAGCCTTTACTTGGTTTTTGAGTATATGGAACATGATCTTGCAGGTCTTGCTGCTGGTCAAGGTGTCAAGTTCACTGAACCTCAGGTCAAATGCTTTATGAAGCAATTGCTCTCAGGCCTTGAGCATTGCCACAGCCGAGGTGTATTGCACCGTGATATTAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATCCTTAAAATTGCAGATTTTGGACTGGCAACTTTCTTTGACCCTAACAAGAAGCAGGCATTGACGAGCAGAGTTGTAACTCTCTGGTATCGTCCCCCTGAGCTTCTTCTCGGGGCCACATTTTATGGTGTCGGCGTTGACCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGGACAGAGGTTGAACAACTGCACAAAATATTCAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATATAAATTGCCAAATGCTACAATCTTTAAACCACAGCAGCCGTATAAACGTTGCATCACAGAAACTTTCAAGGATTTTCCTCCATCTTCAATACCTCTGATTGAAACCCTTCTTGCAATAGATCCTGATGGCCGCGGCACTGCCTCAGCTGCTCTAAATAGTGAATTCTTTACAACTGAGCCCTATGCTTGTGAACCTTCGAGTTTACCGAAGTATCCTCCCAGCAAAGAACTGGATGTAAAACTAAGAGACGAAGAAGCAAGAAGGCAAAAAGCTCTACATGGAAAGGCTAATGATGGTGCCAAAAGAGTCAGAGCACGCGAGCGTGGTCGAGCTATTCCAGCCCCTGAAGCTAATGCTGAGATCCAAACAAACTTAGATAGGTGGAGAGTGGTGAACCACACAAATGCAAAGAGCAAGAGTGAGAAATTTCCACCTCCTCATCAAGATGGAGCTGTTGGATATCCACAAGATGCATCTTCACAAAAAGGGCCTGTTTCATTTGGTGCCACTGACACTACTACTACTACTACTTCCTTTGGTTCAGAAACATTTGATTCTAAACAATCTCATCATGATGGAATTCACAGAGGGAGGAAAACAAGAAAAGAAGATTCAAACAGTGCCTCATCATGGAAATTCATGCGTCCATTCAAGCCATCAACAGTTGGTCTTTCAATGGATTTATTATTTAGGAGCAAATAA 1689 0.466 MGCVFGKPAGTEAHRRRRSKQRSSAGDASDNNDASNAVRVREKQRNRRNSTGDVPVSLPAPERRKPRLDPFAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLLSGKIVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPNKKQALTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYKLPNATIFKPQQPYKRCITETFKDFPPSSIPLIETLLAIDPDGRGTASAALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALHGKANDGAKRVRARERGRAIPAPEANAEIQTNLDRWRVVNHTNAKSKSEKFPPPHQDGAVGYPQDASSQKGPVSFGATDTTTTTTSFGSETFDSKQSHHDGIHRGRKTRKEDSNSASSWKFMRPFKPSTVGLSMDLLFRSK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120995g00003 562 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120995g00003 562 FunFam probable serine/threonine-protein kinase At1g54610 184 425 - -
Stsc120995g00003 562 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Stsc120995g00003 562 FunFam probable serine/threonine-protein kinase At1g54610 88 183 - -
Stsc120995g00003 562 SMART serkin_6 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120995g00003 562 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Stsc120995g00003 562 SUPERFAMILY Protein kinase-like (PK-like) 95 390 IPR011009 -
Stsc120995g00003 562 PANTHER CELL DIVISION PROTEIN KINASE 99 389 - -
Stsc120995g00003 562 MobiDBLite consensus disorder prediction 1 69 - -
Stsc120995g00003 562 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120995g00003 562 MobiDBLite consensus disorder prediction 488 513 - -
Stsc120995g00003 562 MobiDBLite consensus disorder prediction 464 538 - -
Stsc120995g00003 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Stsc120995g00003 562 MobiDBLite consensus disorder prediction 514 537 - -
Stsc120995g00003 562 Gene3D Transferase(Phosphotransferase) domain 1 184 425 - -
Stsc120995g00003 562 CDD STKc_CDK9_like 101 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120995g00003 Stsc-Chr120995 10597 15074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120995g00003 93 422 Core Cell Cycle Gene Families AT5G10270 51.275 1.03e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc120995g00003 Pkinase 3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120995g00003 K08819 - gmx:100807756 962.985