Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120993g00010 ATGTACTTGAGGAGAATACAGTGTAGGGATCGGAGATGGGCTTTAGTATTGCAACCATCAAAATACTTTTCTAGGCCAAGATTCGCAGATCATGCAAATTTGCCATCTTTTTCCTCTAAGACCACTGTGAGAGAATATGCTTCTCATGGTAGTTTCATCAGAAGACATATTTTAGGTTCAGATTCATATAGCTTTGCTTCATATAGAAATAGTTGTACTGGTGTGGACAAAAGAACTAGTTTATCTACAAGTATTCAGTTACGTTCATATAGTTCTGAAGGTGACGGGAGAAATGCAAATGAGGATAAACATGTTCATGTTAAAGATGGAGCGAACATTGATAAGGGGAAGAATCAGAAAGAGAAGATTGGTAAAGATGTCAAGTATTGCAATGTGCATGCACAGCTTGGTGAGCAGGATCAAGAGGAATGGCTTAACAATGAGAAACTTGCCATAGAAAGTAAAAAGAAAGAATCACCATTTTTGACAAGAAGGGATAAGTTCAGAAACGAGTTTCTAAGAAGAATTGTTCCCTGGGAGAAAATAAACATTTCATGGGACACATTTCCATATCACGTCAATGAGCACACCAAGAATCTGCTGGTGGAATGTACTGCTTCACATTTGAGACATAATTCATTCGCTTCATCTTTTGGTGTTCGGCTCACATCTTCAAGTGGGAGGATATTGCTTCAGAGCGATCCTGGCACTGAACTCTATCGTGAGAGGCTAGTTAAAGCTCTTGCACATGATTTACAAGTTCCATTGTTAGTTCTTGATAGTAGCATCCTTGCTCCTTATGATGTTGATGATGAATTATCATCAGAGTATGAGTCTGAAGATGATAATGCAGACTCTGGGGCAGAGGGTTCTCTGGAGTCAGAGAACGAGGATGATAATGATGCTGGCAATGAAGAAGAGTGGACTAGCAGTAATGAGGTTAAGTCAGATGCAAGTGATAATGAAGATGCAATAGCATCGGCTGAGGCTGCTCTTAAGAAGGTTAAGGCAGCTGTTCAGAAACTTGTTCCTTACAACATTGACGAAATTGAAAAGATAACATCTGGAGAATCTGAGAGTTCTGAGTCATCCAGGTCTAATGAAGCCAATTCTTCTGATAAATCTGGGTGCCAGCTAAGAAAAGGTGACCGAGTGAAGTACATTGGACCAACTAATCGAGCTACCATTGATGATAGGCCTTTAATCAATGGCCAGAGAGGAGAGGTATATGAAGTGAGCGGAGATCAAGTTGCTGTCATAATGGATATTAATGAAGATCGTGGCAATGAGGGTGGGGCAGATAATCTTAGCAGTGACGATCATACAAAACCACCGATTCGTTGGATACATGTTAAGGACATTCAGAATGATCTTGATGCTCAAGCACTAGATTGCTATATTGCACTGGAGGCTTTATGTGAGGTCTTGCAATCGAAACAACCTCTCATTGTCTATTTTCCAGATGGTTCACAGTGGTTGCATAAATCAGTTCCTAAGTCAAACCGTAGTGAGTTTTTTCACAAGGTTGAAGAGCTATTTGACCGGTTATCTGGCCCCGTTGTGTTGATCTGTGGGCAAAACAAAGTTCAATCAGGATCAAAGGAGAAAGAACAATTTACAATGATACTACCAAACTTTGGACGACTTGCTAAGCTGCCTCTTTCTCTAAAAAGTTTGACTGGGGGACTTAGAGGTGAAAAGAGATCAGAAGATGATGAAATTCAGAAGCTCTTTTCTAATGTTTTGTGTGTACACCCGCCTAAGGACGAGAATTTGCTGGTAACCTTTAAGAAACAACTTGAAGAAGACAGGAAAATTGTTGTTTCAAGAAGTAATTTGAATGAATTAAGGAAGGTTCTTGAAGAACATCAGCTTTCATGTGTGGATCTATTGCACGTAAACAGTGATGGTGTTATCTTGACAAAACAAAAAGCTGAAAAAGTTATTGGTTGGGCGAAAAACCATTACTTGTCATCATGCCTGCTCCCTTCTGTGAAAGGAGAACGGTTGTGCATCCCTCGTGAAAGTCTTGAAATCGCAATCTCAAGATTATGGGGCCAGGAAAATATATCTAAGAAGCCATCTCAAAACCTTAAGAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCGTCTGTCGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGATATAGGTGCTCTTGAAAATGTGAAAAAGGCACTTAATGAACTAGTTATTCTCCCAATGAGAAGACCTGAACTTTTCTCTCGGGGTAACTTATTGCGGCCTTGTAAAGGAATATTACTTTTTGGTCCTCCTGGAACTGGGAAAACACTTCTGGCCAAAGCACTTGCAACTGAAGCTGGTGCAAATTTTATTAGTATAACTGGCTCAACTCTTACTTCAAAGTGGTTTGGAGATGCAGAAAAACTAACAAAAGCCCTTTTCTCCTTTGCCAGCAAGCTTTCTCCCGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTCTGAGCATGAAGCCACCAGAAGGATGAGGAATGAATTCATGGCAGCTTGGGATGGATTGAGGTCAAAAGAAAATCAAAGAATCCTCATTCTTGGTGCAACCAACCGGCCATTTGACCTTGACGATGCCGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCTGATGCCGAAAATCGAATGAAGATTTTGAGAATATTTCTTGCACAAGAGAGTTTGGACCCTAATTTTGAGTATGACAAACTTGCTAACCTAACTGAAGGATACTCTGGCAGTGATTTGAAGAACCTTTGTGTTGCTGCGGCATATAGACCTGTTCAAGAGCTTATAGAGCAAGAAAAGAGCGTACAGGGAGGGGCTAATGGTACAACTACAGTATTAAGGCCTCTTAATTTGGATGATTTTATTCGGTCAAAATCCACGGTGGGTCCATCTGTGGCATACGATGCAACAAGTATGAATGAGTTGAGGAAGTGGAATGAAATGTATGGTGAAGGTGGTAGTAGGACTAAAGCATCATTCGGATTTTGA 3051 0.4041 MYLRRIQCRDRRWALVLQPSKYFSRPRFADHANLPSFSSKTTVREYASHGSFIRRHILGSDSYSFASYRNSCTGVDKRTSLSTSIQLRSYSSEGDGRNANEDKHVHVKDGANIDKGKNQKEKIGKDVKYCNVHAQLGEQDQEEWLNNEKLAIESKKKESPFLTRRDKFRNEFLRRIVPWEKINISWDTFPYHVNEHTKNLLVECTASHLRHNSFASSFGVRLTSSSGRILLQSDPGTELYRERLVKALAHDLQVPLLVLDSSILAPYDVDDELSSEYESEDDNADSGAEGSLESENEDDNDAGNEEEWTSSNEVKSDASDNEDAIASAEAALKKVKAAVQKLVPYNIDEIEKITSGESESSESSRSNEANSSDKSGCQLRKGDRVKYIGPTNRATIDDRPLINGQRGEVYEVSGDQVAVIMDINEDRGNEGGADNLSSDDHTKPPIRWIHVKDIQNDLDAQALDCYIALEALCEVLQSKQPLIVYFPDGSQWLHKSVPKSNRSEFFHKVEELFDRLSGPVVLICGQNKVQSGSKEKEQFTMILPNFGRLAKLPLSLKSLTGGLRGEKRSEDDEIQKLFSNVLCVHPPKDENLLVTFKKQLEEDRKIVVSRSNLNELRKVLEEHQLSCVDLLHVNSDGVILTKQKAEKVIGWAKNHYLSSCLLPSVKGERLCIPRESLEIAISRLWGQENISKKPSQNLKNLAKDEFESNFISSVVPPGEIGVKFDDIGALENVKKALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLSPVIIFVDEVDSLLGARGGASEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQESLDPNFEYDKLANLTEGYSGSDLKNLCVAAAYRPVQELIEQEKSVQGGANGTTTVLRPLNLDDFIRSKSTVGPSVAYDATSMNELRKWNEMYGEGGSRTKASFGF 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120993g00010 1016 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 721 897 - -
Stsc120993g00010 1016 ProSitePatterns AAA-protein family signature. 866 885 IPR003960 GO:0005524|GO:0016887
Stsc120993g00010 1016 Gene3D - 895 980 - -
Stsc120993g00010 1016 SMART AAA_5 759 896 IPR003593 GO:0016887
Stsc120993g00010 1016 Gene3D - 721 989 IPR027417 -
Stsc120993g00010 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 721 945 IPR027417 -
Stsc120993g00010 1016 MobiDBLite consensus disorder prediction 354 383 - -
Stsc120993g00010 1016 MobiDBLite consensus disorder prediction 359 376 - -
Stsc120993g00010 1016 Pfam AAA+ lid domain 917 952 IPR041569 -
Stsc120993g00010 1016 MobiDBLite consensus disorder prediction 272 306 - -
Stsc120993g00010 1016 MobiDBLite consensus disorder prediction 272 321 - -
Stsc120993g00010 1016 Pfam ATPase family associated with various cellular activities (AAA) 763 893 IPR003959 GO:0005524|GO:0016887
Stsc120993g00010 1016 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 167 1011 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120993g00010 Stsc-Chr120993 73448 83866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120993g00010 757 955 Calmodulin-binding Proteins AT3G56690 36.453 1.55e-32 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120993g00010 - - gmx:100812718 1620.14