Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120991g00008 ATGGAGTTCTTCCAATTTCCCATTTTTCCATTTATTATTCTGTTAAGTTTCATATTTATTGTAGCAGCTGACTTGAACTCTGACAAACAAGCACTCCTTGATTTTTCTTCTAATGTTCCCCACCCTCCAAAGCTAAACTGGAGTGCAACTACTCCAGTATGCACATCATGGACTGGTGTGATTTGCAATGTGAATCAAACTCGTGTTATCGGCATCCACCTTCCAGGGATTGGACTCAAAGGGTTGATTCCATCAAAAACCATAGGAAAACTAGATGCTCTTATAACCCTGAGCCTTCATTCCAATGGTCTTAGAGGAAATCTTCCTTCTGATATTTTCTCCATTCCTTCACTCCAATATGTTCATCTCCAGCACAATAACTTCTCAGGTCCAATCCCTTCTTTTGTGTCTCCTAAACTCGTTGTTTTTGATGTTTCCTTTAACAACTTCTCGGGCAGCATTCCACCTACGTTTCAGAATCTTAGACGTCTCGTATGGTTGTATCTCCAAAAGAACTCCATCTCTGGAGTTATCCCTGAGTTCAACCTTCCAATGCTTAAATTCTTGAATCTAAGCTATAATAACTTAAATGGCTCAGTTCCAGATTCCATCAAACAATTTCCCTATACTTCTTTTGTTGGAAACTCTCTTTTTTGTGGTCCACCTCTCAATCATTGTTCTGCAATCTCTCCTTCTCTGTCTCCATCTTCTACTCCTGTTTACCAAGCACTTTCTCCAGAAACCAACAAAAATCAAAAGGCTACAACTTCTAATAAATCTTTTGGCATAGCTACTATTCTTGCTCTTATAATTGGTGGCTGTGCTTTCCTCTCTCTTTTAGTTTTATTTATCTTTGTATGCTGCTTGAAGAGGAAAAACAGCAAAACCAATGGAATACTTAAAGGGAAAACATCTTGTGCCGGGAAGACCGAGGTTTCAAAGAGTTTTGGCAGTGGGGTGCAAGCGGCTGAAAAGAACAAGTTGTTTTTCTTTGAAGGTTTTGCTAACAGTTTTGACCTCGAAGATTTATTGAAAGCCTCAGCTGAAGTTCTTGGAAAGGGAAGCTGTGGAACAACATACAAGGCCACTCTGGAGGATGGAACAACAGTAGTGGTCAAGAGAGCTTATTACTACTCCAAAGATGAGAAACTTGTAGTTTATAACTACATGGCGGGAGGAAGTTTGTTTAGCCTTTTACATGGAAACAGAGGTATAGGAAGAACTCCATTGGATTGGGATTCAAGAATGAAGATTGCACTTGGACTTGCAAAAGGAATTGCATTCGTTCACTCTCAAGGAGGTCCCAAGTTCACTCATGGCAACATCAAATCAACCAATCTGCTCATAACCCAAGAACTCGACGGTTGCATCACCGATGTAGGACTAACTCCTCTAATCAATACCCCTCCAACAATGTCCAGGGCTAACAACTACGTTGCACCAGAAGTTATTGAGTCAAGGAAGATCACCCCAAAGTCTGATGTCTACAGCTTCGGAGTGATCCTCCTTGAATTGCTCACAGGCAAGAGCCCACTTGGGTATGCCGGATATGAAGACATGGTTGATCTTCCGAGGTGGGTGAGGTCCGTGGTGCGTGAGGAATGGACAGCCGAAGTTTTTGATGTGGAGCTGCTAAGAGGGAATTATGTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCATTGGCATGTGTAGCAAAGGTTGCAGAGAATAGGCCAAGAATTGATGAAGCTGTTAGAACTATAGAGGAAATTAGGCAGCCTGAGTTGAAGAACCGTACTTCATCCGAATCCGAATCTAATGTGCAAACACCATAA 1818 0.4164 MEFFQFPIFPFIILLSFIFIVAADLNSDKQALLDFSSNVPHPPKLNWSATTPVCTSWTGVICNVNQTRVIGIHLPGIGLKGLIPSKTIGKLDALITLSLHSNGLRGNLPSDIFSIPSLQYVHLQHNNFSGPIPSFVSPKLVVFDVSFNNFSGSIPPTFQNLRRLVWLYLQKNSISGVIPEFNLPMLKFLNLSYNNLNGSVPDSIKQFPYTSFVGNSLFCGPPLNHCSAISPSLSPSSTPVYQALSPETNKNQKATTSNKSFGIATILALIIGGCAFLSLLVLFIFVCCLKRKNSKTNGILKGKTSCAGKTEVSKSFGSGVQAAEKNKLFFFEGFANSFDLEDLLKASAEVLGKGSCGTTYKATLEDGTTVVVKRAYYYSKDEKLVVYNYMAGGSLFSLLHGNRGIGRTPLDWDSRMKIALGLAKGIAFVHSQGGPKFTHGNIKSTNLLITQELDGCITDVGLTPLINTPPTMSRANNYVAPEVIESRKITPKSDVYSFGVILLELLTGKSPLGYAGYEDMVDLPRWVRSVVREEWTAEVFDVELLRGNYVEEEMVQMLQIALACVAKVAENRPRIDEAVRTIEEIRQPELKNRTSSESESNVQTP 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120991g00008 605 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Stsc120991g00008 605 PANTHER OS05G0588300 PROTEIN 11 597 - -
Stsc120991g00008 605 FunFam Probable inactive receptor kinase RLK902 25 181 - -
Stsc120991g00008 605 Gene3D Phosphorylase Kinase; domain 1 311 388 - -
Stsc120991g00008 605 ProSiteProfiles Protein kinase domain profile. 305 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120991g00008 605 Gene3D Transferase(Phosphotransferase) domain 1 390 604 - -
Stsc120991g00008 605 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Stsc120991g00008 605 SUPERFAMILY Protein kinase-like (PK-like) 349 582 IPR011009 -
Stsc120991g00008 605 Pfam Leucine rich repeat 138 196 IPR001611 GO:0005515
Stsc120991g00008 605 Gene3D Ribonuclease Inhibitor 182 227 IPR032675 -
Stsc120991g00008 605 Pfam Protein kinase domain 376 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120991g00008 605 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 390 596 - -
Stsc120991g00008 605 SUPERFAMILY L domain-like 27 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120991g00008 Stsc-Chr120991 72671 75790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120991g00008 1 603 Receptor kinase-like Gene Family AT5G58300 52.790 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc120991g00008 Pkinase 1.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120991g00008 - - aprc:113868460 879.782