Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120990g00012 ATGCTCGGACCCAGAATCGGGTCGGGTTCTTTCGCGGTAGTGTGGCGCGCAAGGCACCGCCACTCCGGCATGGTTGTGGCTATTAAGGAGATCGACAAGAAGCAGCTCAGCCCCAAAGTCAGTGAGAATCTGTTTAAAGAGATTACTATTCTCAGCACGATCAATCATCCCAACATCATTCGTCTCTTCGAAGCTATCCAGACCACGGACAGGATTTACCTTGTGTTGGAGTATTGTAGTGGTGGCGACCTTGCCGCTTACATTCATCGCCATGGAAAAGTTTCTGAAGCCACTGCCAGGCACTTCATGATCCAATTGGCTGCAGGGTTGCAGGTTCTCCAAGAGAAGAACCTCATTCACAGAGATTTGAAACCACAGAACTTACTATTGGCAACTTCTGCAGCTACACCACTCATGAAAATAGGAGATTTTGGTTTTGCAAGGTCTCTCACACCCCAGGGTTTGGCTGACACTCTGTGTGGTTCACCATTATACATGGCTCCAGAGATAATTCAAAACCAAAAGTATGATGCCAAGGCCGATTTATGGAGTGTGGGGGCAATATTGTTCCAACTAGTAACTGGAAGGCCGCCATTTGATGGAAATAGTCAATTGCAGCTTTTTCAAAACATTTTGACATCCACCGAGCCGCAGTTTCCCCCAGAGGCTTTAAAAGAGCTACATTCTGATTGCTTGGATCTTTGCAGAGGCCTTTTACGTCAAAACCCAGTTGAGCGATTAACGTTCAAGGAGTTCTTCAATCACAACTTCCTTCAGGAACCCAGGTTAATCATGCATGTTGAGCAGTCTTTATTGCATCCATCAGAGAGATTTGTGGTTCAACACTTAGTTACCTCCACTTCTGACAACACGTCTCAATTGCATTCCGGGCATCATGTTGAGTCATTAGTAGATGATCCAGTTGTACTCAGTTCTGTTCTCAATGATACTCTGGCATTGCAAAGAAATACCGGGAAGAAAACAATTGGCATTCAGACTGTTGAGACGTCTGGTTTTGGTGGCTCTCCTTTGTCAAAACAACCTCAAGTTTCTCGCTTAATGGAGTCCATTGAGAAGGATTATGTCCTAGTCAATCATCATTTTGCATCATTGGAAGCTTTCTCTGATTACTTTGAGGCATCTGTGCAAGATAATTCCATTTGCAAGGTTTCTATTTGCACTTCAAAGAGGCCTAACGTGGAAACTGGTGTTCCGATGCAAACAAACGATCCATCCCATTTTCACGCTGATCAATTAGAAGATCCAAAATGCAGCGAACCTGTGGCATCAGAGGCGTCCTATGCATTTGATGTCTTAAGTAAAATGCAAGGAACTTCCTCGCTGAGCCCTTCAAACAGGTTAGAGTTCTTGCATCTGTATGTGCAGATCCTTGCGGAGCTTTCATGTGAAAAGTACAATGCACAAATGTATCTGGAATCATTTGCAGTTGAGTTAGTAGTTTTGGCTATATGGAAGAAAGCTCTAGAAGTTTGTAAATCTTGGATGGACTCTATTAATAAGGGTGTGTTGCCTGCAAGCACTTCGGCCAATGAAACCAGAATTTCCCATGGAGATGTGGATTCATCACAAAACATGGAAAAGAAAATAAATTTCTGTGATCCTATCTCAGTCTACATGTGGGCAAAAGAGGGGTTTATTGCTGCAGTTGATAGCGCTGAGAAACTGTCACGTCATATTCAAAATATGGATGGAGCAGCTGAGATGCCAGATGCAATGGAGATCATATTCCAAGAAGCACTCCTAGTTGGTAAAAGTGGTGCTGTAGATGAATATATGGAGAACAGAGGTAGGGCAGCTGCATCTTATTCAAAAGCTATGCTTCTACTTTCCTTTATTGTGGGGGAAGCAGCAAACCTTCCACTGAACCCACCATTTTTGCTTACTGCTGCTAATGAGAAGCGGATCCTACAATATATTCTCAACTTGCAATCCCATCAAAAATCTTCATCGGAGTCTTCTTCCAAAGCAGCCCATATTCTTTTGTCCAAGTAA 2013 0.4347 MLGPRIGSGSFAVVWRARHRHSGMVVAIKEIDKKQLSPKVSENLFKEITILSTINHPNIIRLFEAIQTTDRIYLVLEYCSGGDLAAYIHRHGKVSEATARHFMIQLAAGLQVLQEKNLIHRDLKPQNLLLATSAATPLMKIGDFGFARSLTPQGLADTLCGSPLYMAPEIIQNQKYDAKADLWSVGAILFQLVTGRPPFDGNSQLQLFQNILTSTEPQFPPEALKELHSDCLDLCRGLLRQNPVERLTFKEFFNHNFLQEPRLIMHVEQSLLHPSERFVVQHLVTSTSDNTSQLHSGHHVESLVDDPVVLSSVLNDTLALQRNTGKKTIGIQTVETSGFGGSPLSKQPQVSRLMESIEKDYVLVNHHFASLEAFSDYFEASVQDNSICKVSICTSKRPNVETGVPMQTNDPSHFHADQLEDPKCSEPVASEASYAFDVLSKMQGTSSLSPSNRLEFLHLYVQILAELSCEKYNAQMYLESFAVELVVLAIWKKALEVCKSWMDSINKGVLPASTSANETRISHGDVDSSQNMEKKINFCDPISVYMWAKEGFIAAVDSAEKLSRHIQNMDGAAEMPDAMEIIFQEALLVGKSGAVDEYMENRGRAAASYSKAMLLLSFIVGEAANLPLNPPFLLTAANEKRILQYILNLQSHQKSSSESSSKAAHILLSK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120990g00012 670 Pfam Protein kinase domain 5 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120990g00012 670 ProSiteProfiles Protein kinase domain profile. 1 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120990g00012 670 SMART serkin_6 1 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120990g00012 670 FunFam Non-specific serine/threonine protein kinase 1 80 - -
Stsc120990g00012 670 CDD STKc_ATG1_ULK_like 6 257 - -
Stsc120990g00012 670 ProSitePatterns Protein kinases ATP-binding region signature. 6 29 IPR017441 GO:0005524
Stsc120990g00012 670 SUPERFAMILY Protein kinase-like (PK-like) 3 307 IPR011009 -
Stsc120990g00012 670 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 3 529 IPR045269 GO:0004674|GO:0006914
Stsc120990g00012 670 Gene3D Transferase(Phosphotransferase) domain 1 1 329 - -
Stsc120990g00012 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 118 130 IPR008271 GO:0004672|GO:0006468
Stsc120990g00012 670 FunFam Serine/threonine-protein kinase ATG1 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120990g00012 Stsc-Chr120990 59255 63144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120990g00012 2 251 CBL-interacting serine-threonine protein kinases AT2G30360 36.719 1.24e-49 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Stsc120990g00012 Pkinase 1.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120990g00012 - K08269 gmx:100782508 877.47