Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120990g00009 ATGGAAACTCCATTGGAATCAAGTGCTGCAAACAATAATCATTTTAAACCCCAAGAAGAAGAAGAAGAAGACAGCTTGAGTTCTGCATTGCTAGTACTGGGTCTGAATGTGGTTCCACTGGCTCTGAAATCCGCGGTTGAGCTTGGTGTGTTTGACACCATAGCCAAAGCTGGTGAAGGCGCCATGCTCTCAGCAAAGGACGTTGCCTCTCAGATTGGAAGCAACAACCCAGAAGCACCTCACATGCTAGATCGTCTTCTTGGCTTGCTCACAACTCACTCTTTCCTTCGTTGCTCTGTTTCACACCATGATCATCCTCATCAAAGACTCTACAGCCTCTCCCCTCGCTCCAAGTATTTTGTCTCCGACCCCGACAATGGCTTCTCATTCGGACCCGTCTTGGCTTTGCTTCTCGACGATGTCTTCTACCATAGCTGGAAGGAAGTGAAAGGAGCAATTATGGAAGGTGGAATTCCATTCAACAGAGTTTATGGCATGCATGCCTTTGAGTACCCTGGCGTAGATCAAAGGTTCAATGAAGTGTTCAACAAAGCTATGGAAAACTCCACCACTCTAATAATGAAGAAGATTCTTGAATCTTACAAAGGCTTTGAGGACATCAATACACTGGTGGACGTTGGTGGTGGTGTTGGGGTGAATGCCAAATTGATCACTTCCAAATATTCCCATGTAAACGCTATTAATTTTGATCTGCCTCATGTCATACAGCATGCTCCTCCCTATGCTGGCGTGGAGCACGTGGCAGGAGATATGTTTGAGAGTGTTCCTAAAGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGACGAGAAGTGTTTGGAGCTGTTAAGGAATTGTCACGAGGCAATTCCAGATGATGGGAAGGTGATTGTGGTGGAGAGAATACTGCCAGAGGTGCCTGAGACAACACTTGCTGCCAAATCTAGTTTCCAATCTGATGTCTTAATGATGATTCAGAACCCAGGAGGAAAAGAGCGCACCCACCAGGAATTCATGGAATTAACGAAAGCATCTGGTTTTAGTGCCATCAAATTGGTTTGCTGCGTCTCTGATCTCTGGGTTATGGAGATCTTCAAGTAG 1110 0.4541 METPLESSAANNNHFKPQEEEEEDSLSSALLVLGLNVVPLALKSAVELGVFDTIAKAGEGAMLSAKDVASQIGSNNPEAPHMLDRLLGLLTTHSFLRCSVSHHDHPHQRLYSLSPRSKYFVSDPDNGFSFGPVLALLLDDVFYHSWKEVKGAIMEGGIPFNRVYGMHAFEYPGVDQRFNEVFNKAMENSTTLIMKKILESYKGFEDINTLVDVGGGVGVNAKLITSKYSHVNAINFDLPHVIQHAPPYAGVEHVAGDMFESVPKGDAIFMKWILHDWSDEKCLELLRNCHEAIPDDGKVIVVERILPEVPETTLAAKSSFQSDVLMMIQNPGGKERTHQEFMELTKASGFSAIKLVCCVSDLWVMEIFK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120990g00009 369 PANTHER O-METHYLTRANSFERASE 37 350 IPR016461 GO:0008168
Stsc120990g00009 369 Pfam Dimerisation domain 41 91 IPR012967 GO:0046983
Stsc120990g00009 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 365 IPR029063 -
Stsc120990g00009 369 MobiDBLite consensus disorder prediction 1 22 - -
Stsc120990g00009 369 FunFam Caffeic acid 3-O-methyltransferase 7 120 - -
Stsc120990g00009 369 FunFam Caffeic acid O-methyltransferase 122 369 - -
Stsc120990g00009 369 SUPERFAMILY "Winged helix" DNA-binding domain 20 123 IPR036390 -
Stsc120990g00009 369 Pfam O-methyltransferase domain 146 351 IPR001077 GO:0008171
Stsc120990g00009 369 Gene3D - 7 120 IPR036388 -
Stsc120990g00009 369 PIRSF O-mtase 6 369 IPR016461 GO:0008168
Stsc120990g00009 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 369 IPR016461 GO:0008168
Stsc120990g00009 369 Gene3D Vaccinia Virus protein VP39 123 369 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120990g00009 Stsc-Chr120990 37775 39843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120990g00009 13 369 Monolignol Biosynthesis Gene Families AT5G54160 50.000 2.33e-128 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120990g00009 K13066 - gmx:100789402 470.314