Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120990g00007 ATGGAAGCACAAAGCCCTCATCGCCATTCACAAGTCATTGAAATCAGTGGAGGAGCAGCAAGTAGTAATAAGATTTGTGGGGAAGCAGCATGCGGGTTCTCCAAGGATTCTGAAGAAAGATCAGCTTCGATGCGAAAGCTTTTCATAGCAGTGTTGCTTTGTGTTATTTTCATGAGCGTTGAGGTAGTTGGAGGAATCAAAGCAAACAGTCTGGCAATATTAACTGATGCAGCACATCTGCTTTCAGATGTTGCAGCATTCGCCATCTCTTTGTTTTCTCTATGGGCTTCTGGATGGGAAGCCAATCCTCGCCAGTCATACGGCTTCTTCAGGATTGAGATTCTCGGTGCACTTCTTTCCATCCAGTTGATATGGTTGCTTGCTGGGATCCTCGTCTATGAAGCCATTCAAAGAATTATTTCCGGAACTCGTGATGTCAATGGCTTCTTAATGTTCCTCGTTGCTGCATTTGGTCTAGTTGTTAACATCATTATGGCTCTCTTGTTGGGTCATAGCCACAGCCATGGACATAGTACTGATCATGATCATACAGAAGAGTTTCACCATGCAGAAGATGATGATGATGATGATGAGGATGCTGCTACTAGAGCGTTTCTTGGGGAATCGAAGAATGTGAATGTGCAGGGGGCTTATCTGCATGTAGTTGGGGATTCTGTTCAGAGTGTGGGGGTAATGATTGGTGGAGCAATCATATGGTGGAAGCCGGAGTGGCATATAGTTGATTTAATTTGCACTCTGATCTTTTCAGTGATTGTTTTGGGGACAACTGTAAACATGCTCCGGAACATACTGGAAGTTCTGATGGAGAGCACGCCGCGTGAGATAGACGCGGCGGAGATCCAAAGGGGGCTGCTGGAAATGGAGGAGGTGGTGGCTGTTCATGAGTTGCATGTTTGGGCCATTACTGTTGGGAAGGTTTTGATGGCTTGCCATGTTATAGTTAGGCCTGAAGTGAATGCAGACATGGTGCTGGACAAGTTGTTCGGTGAGCACCTAGAAGTGAGTTGCTTGGAACAAGGTTTTGTTGATAAAGAGAGCAACTTCAAACTCAATGAGGATGAAGAACATACTTTAATATCAAGCTTGGAGGGTAACATGCCATTCCTACAGATGCTTCAGAGCGTGGATTATTCACCACCCTTTTTCCCCTTCAAAGATCCAAACTTTCAGGCACTATTAAGACCCCAGCATCTGAAGAAACCATGGGAAGGAATGCCCTACATACCCACATTGGAATCCGAAATGAATGAACTCGAACAACACACAGAGTCCCAGCCTAAAGATAGCAGCAGGTTATCGAAACATGATGATCAGGAGAGGGTAAGGAAGAGGAAGAGAGGAAAAGAAAGCAAAGAGAAGGACAAGGAAGAGGTTGAGAACCAGCGCATGACCCACATTGCTGTGGAACGCAATAGGCGGCGCCAAATGAATGAGCATCTAACTGTTCTGAAATCTCTCATGCACCCTTCCTATATTCAAAAGGGTGACCATGCATCAATCATAGGGGGTGCAATAGACTTTGTGAAGGAATTGGAGCAGTTAGTTGAATCCCTTGAAGCCCAAAGAAGGATGAGAAACAAGGAAGAAGAGGATGGTGGGATGAAGTCATCATCATCAGTATCAAGTAGTGGTGGGAATGAGGCGATGAAGGCAGAGAGATGGTCAAAGGTGGGAGGGATAGAGGTGAGTGTGATTCAAAGGCATGTCAACTTGAGAATCCAGTGCGAGAGGAGAGCAGGGCTATTGATAAATGCAATAGTTGCCTTGGAGAACCTAAGGCTCAATATTCTGCATCTCAACATCACATCCTCAGATTCTTCAGTTCTCTATTCTTTCAGTCTCAAGATTGAAGAAGATAGCAAGTTAGGGTCAGCAAATGAAATTGCAGAGGCAGTTGATAAGACATTGAGCTTCATTAATTAA 1944 0.4475 MEAQSPHRHSQVIEISGGAASSNKICGEAACGFSKDSEERSASMRKLFIAVLLCVIFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEANPRQSYGFFRIEILGALLSIQLIWLLAGILVYEAIQRIISGTRDVNGFLMFLVAAFGLVVNIIMALLLGHSHSHGHSTDHDHTEEFHHAEDDDDDDEDAATRAFLGESKNVNVQGAYLHVVGDSVQSVGVMIGGAIIWWKPEWHIVDLICTLIFSVIVLGTTVNMLRNILEVLMESTPREIDAAEIQRGLLEMEEVVAVHELHVWAITVGKVLMACHVIVRPEVNADMVLDKLFGEHLEVSCLEQGFVDKESNFKLNEDEEHTLISSLEGNMPFLQMLQSVDYSPPFFPFKDPNFQALLRPQHLKKPWEGMPYIPTLESEMNELEQHTESQPKDSSRLSKHDDQERVRKRKRGKESKEKDKEEVENQRMTHIAVERNRRRQMNEHLTVLKSLMHPSYIQKGDHASIIGGAIDFVKELEQLVESLEAQRRMRNKEEEDGGMKSSSSVSSSGGNEAMKAERWSKVGGIEVSVIQRHVNLRIQCERRAGLLINAIVALENLRLNILHLNITSSDSSVLYSFSLKIEEDSKLGSANEIAEAVDKTLSFIN 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120990g00007 647 MobiDBLite consensus disorder prediction 530 555 - -
Stsc120990g00007 647 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 9 333 - -
Stsc120990g00007 647 SMART finulus 473 524 IPR011598 GO:0046983
Stsc120990g00007 647 Coils Coil 515 538 - -
Stsc120990g00007 647 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 533 IPR036638 GO:0046983
Stsc120990g00007 647 Pfam Helix-loop-helix DNA-binding domain 468 519 IPR011598 GO:0046983
Stsc120990g00007 647 Gene3D Cation efflux protein transmembrane domain 43 274 IPR027469 -
Stsc120990g00007 647 CDD bHLH_AtFAMA_like 470 536 - -
Stsc120990g00007 647 MobiDBLite consensus disorder prediction 423 470 - -
Stsc120990g00007 647 Gene3D - 465 540 IPR036638 GO:0046983
Stsc120990g00007 647 NCBIfam cation diffusion facilitator family transporter 44 329 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc120990g00007 647 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 467 518 IPR011598 GO:0046983
Stsc120990g00007 647 Pfam Cation efflux family 47 275 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc120990g00007 647 MobiDBLite consensus disorder prediction 179 198 - -
Stsc120990g00007 647 SUPERFAMILY Cation efflux protein transmembrane domain-like 41 276 IPR027469 -
Stsc120990g00007 647 ProSiteProfiles ACT domain profile. 577 647 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120990g00007 Stsc-Chr120990 28911 32316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120990g00007 1 335 Inorganic Solute Cotransporters AT2G46800 65.092 4.98e-159 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120990g00007 Cation_efflux 3.6e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120990g00007 K14689 - ahf:112759031 487.648