Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120990g00005 ATGCAAATGCAAATGCAAATGCAGGAGGATCAGATCAAGAACCTGAAGGACGAGAATGCGCCGCCGGGGGATATGGTGGTTAGGTGGGAGAAGTTTCTCCCTCGGATGGCGCTCAGAGTGTTGCTTGTTGAAGCCGATGATTCCACTCGCCAGATCATCTCCGCTCTTCTCCGAAAATGCAGTTACAAAGTTGCTGCAGTTCCTGACGGCCTAAAGGCATGGGAGACATTGAAGAGCAAAGCACCTGAGATTGATCTTATATTAACAGAAGTGGAGTTGCCATCCATATCTGGATTCTCACTTCTCACTTTGATAATGGAACATGACATTTGCAAAAGCATTCCCGTCATAATGATGTCCACTAATGATTCAGTTAGCATGGTGTTCAAATGCATGTTGAAAGGCGCAGCTGATTTTCTTATTAAACCCATTCGGAGGAATGAGCTACGGAACTTGTGGCAGCACGTATGGAGAAGGCATGCTATTAGCGGGTCCGATCAGAGTTTAACATTGCTGCAGAATAAACTTGAAATTGCTGCAGAAAACAATGCTGCAAGCAATGACTCTAGTGGTTCTGTGGCTTCCCCCCAGAAAAATAATGAGTACAGTGGTGAGAAGGCTAGTGACGCTCAAGTTACCTCCCCGTTGAAGAGCTCTTCAAAGTTGAGCGATATTCATACAGTGAAGTATGAAGAGGCTAGCAAATTTGAAAGGGAATCTGCTACACACCATAAGGAAGCCGGAGAGAAATCAATTATGTTTGTGTCAGATGCTACAAGGTGCAACAAAACTCTTAATGCGACAGGTGTAAGGCTAAATCAAGGCTTTGATTGTGATGAAACAGAAAATGAAGATGAAGTTTTAAGAACAGAATTAAGCAAAGCCAATCCTCATATTAATACCAAGATTAATGAATGCAGTGATGAACTGGTAGAACCTTCTAGAGGGGCTATTGACTTGATTGCTACATTTAAGAATCTTCCGAAGAGCACGGGTGAAAGTTGTAGTATCGATGCTGATAACACAGCCAAGTCGGTTTTTGATACACAATTGGGACTTTCTTTAAGAAGTGATTTTCCTAGTAGCTCATGTAAGCCTGCAATGGAAGAAAGGCAAATATTGAACCATTCAACTGCGTCGGCCTTTTCTTGGTATAGCAGTAGTAAGTTGTTGCAGCCCCTTTTTCCATCTCAATCAATTACTTCTGCTAAATTATCAAGTGCCAGTTGTAATTCTCATGAGTCCCATAAGTCATCTGAAAATACAGATACTTATCATCAGCATGGTGATAAAATTCAAAATACACAGAACATGACCACTTTGGTCGCTCAGACTGGCCAAATTGAACCAAAATCACCAAACAATCAACTTGGATTCTTTTGTGCTGTTGGGGTTTCTTCTGATCATAACCCTACGGGACATGGCAATGCTTTCCCTAGTATGCCCTGTGCACAATCAGCTGTGCATCCCGTATGGACTCCGAAACCAGTGTCCCAGAAAGAAAATTCTCCATTTCCCACTAGTGCTTCTTCCCATTCCAACCCTGAAACTGACAATTCGGAACGTCATCGATGGTCAGATGATGCCACCAACACTTCTGATCAAAATGTAAATGATCAAAGCAAGTTGGATTGTGTTAGGCATGACTTTGCTGCTGCTGGTCAGAGTGCAAGTACTAGTTTTTACCTTGAAAATCATAATAGTAGCGGTGCCTATGGAAGCATAGGCAGTGGAAGTGATGCAAATGCTACTTCAGCTGTGGTAACTAAGAACAACCCAGAAAGTTTTGCTGATAGTAGTCAACCTAGTCATGATGGATTCAGAGGGACAGATTCTCATCGGAGCAGCGAAAGGGAAGCAGCTCTAACAAAGTTTCGGCTGAAGAGGAAGGAGAGATGCTACGAGAAGAAGGTTCGATATCAGAGCCGGAAAAGACTGGCAGAGCAGCGCCCTAGGGTGAAAGGGCAGTTCGTTCGCCAAGTACAAAATGATCATCCAGTAGCAGATGTAGGTGGTTCCTGA 2022 0.4327 MQMQMQMQEDQIKNLKDENAPPGDMVVRWEKFLPRMALRVLLVEADDSTRQIISALLRKCSYKVAAVPDGLKAWETLKSKAPEIDLILTEVELPSISGFSLLTLIMEHDICKSIPVIMMSTNDSVSMVFKCMLKGAADFLIKPIRRNELRNLWQHVWRRHAISGSDQSLTLLQNKLEIAAENNAASNDSSGSVASPQKNNEYSGEKASDAQVTSPLKSSSKLSDIHTVKYEEASKFERESATHHKEAGEKSIMFVSDATRCNKTLNATGVRLNQGFDCDETENEDEVLRTELSKANPHINTKINECSDELVEPSRGAIDLIATFKNLPKSTGESCSIDADNTAKSVFDTQLGLSLRSDFPSSSCKPAMEERQILNHSTASAFSWYSSSKLLQPLFPSQSITSAKLSSASCNSHESHKSSENTDTYHQHGDKIQNTQNMTTLVAQTGQIEPKSPNNQLGFFCAVGVSSDHNPTGHGNAFPSMPCAQSAVHPVWTPKPVSQKENSPFPTSASSHSNPETDNSERHRWSDDATNTSDQNVNDQSKLDCVRHDFAAAGQSASTSFYLENHNSSGAYGSIGSGSDANATSAVVTKNNPESFADSSQPSHDGFRGTDSHRSSEREAALTKFRLKRKERCYEKKVRYQSRKRLAEQRPRVKGQFVRQVQNDHPVADVGGS 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120990g00005 673 MobiDBLite consensus disorder prediction 496 515 - -
Stsc120990g00005 673 MobiDBLite consensus disorder prediction 592 606 - -
Stsc120990g00005 673 Pfam Response regulator receiver domain 40 151 IPR001789 GO:0000160
Stsc120990g00005 673 Pfam CCT motif 618 660 IPR010402 GO:0005515
Stsc120990g00005 673 ProSiteProfiles Response regulatory domain profile. 39 157 IPR001789 GO:0000160
Stsc120990g00005 673 MobiDBLite consensus disorder prediction 592 621 - -
Stsc120990g00005 673 MobiDBLite consensus disorder prediction 607 621 - -
Stsc120990g00005 673 MobiDBLite consensus disorder prediction 183 220 - -
Stsc120990g00005 673 Gene3D - 36 284 - -
Stsc120990g00005 673 ProSiteProfiles CCT domain profile. 618 660 IPR010402 GO:0005515
Stsc120990g00005 673 MobiDBLite consensus disorder prediction 494 540 - -
Stsc120990g00005 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 396 IPR045279 GO:0009736
Stsc120990g00005 673 MobiDBLite consensus disorder prediction 645 673 - -
Stsc120990g00005 673 SMART REC_2 38 153 IPR001789 GO:0000160
Stsc120990g00005 673 CDD psREC_PRR 40 143 - -
Stsc120990g00005 673 SUPERFAMILY CheY-like 38 165 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120990g00005 Stsc-Chr120990 18680 23842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120990g00005 613 662 Response Regulator Gene Family AT5G24470 82.000 2.89e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Stsc120990g00005 Response_reg 2.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120990g00005 K12130 - gmx:100779346 855.899