Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120990g00004 ATGCAAATGCAAATGCAAATGCAGGAGGATCAGATCAAGAACCTGAAGGACGAGAATGCGCCGCCGGGGGATATGGTGGTTAGGTGGGAGAAGTTTCTCCCTCGGATGGCGCTCAGAGTGTTGCTTGTTGAAGCCGATGATTCCACTCGCCAGATCATCTCCGCTCTTCTCCGAAAATGCAGTTACAAAGTTGCTGCAGTTCCTGACGGCCTAAAGGCATGGGAGACATTGAAGAGCAAAGCACCTGAGATTGATCTTATATTAACAGAAGTGGAGTTGCCATCCATATCTGGATTCTCACTTCTCACTTTGATAATGGAACATGACATTTGCAAAAGCATTCCCGTCATAATGATGTCCACTAATGATTCAGTTAGCATGGTGTTCAAATGCATGTTGAAAGGCGCAGCTGATTTTCTTATTAAACCCATTCGGAGGAATGAGCTACGGAACTTGTGGCAGCACGTATGGAGAAGGCATGCTATTAGCGGGTCCGATCAGAGTTTAACATTGCTGCAGAATAAACTTGAAATTGCTGCAGAAAACAATGCTGCAAGCAATGACTCTAGTGGTTCTGTGGCTTCCCCCCAGAAAAATAATGAGTACAGTGGTGAGAAGGCTAGTGACGCTCAAGTTACCTCCCCGTTGAAGAGCTCTTCAAAGTTGAGCGATATTCATACAGTGAAGTATGAAGAGGCTAGCAAATTTGAAAGGGAATCTGCTACACACCATAAGGAAGCCGGAGAGAAATCAATTATGTTTGTGTCAGATGCTACAAGGTGCAACAAAACTCTTAATGCGACAGGTGTAAGGCTAAATCAAGGCTTTGATTGTGATGAAACAGAAAATGAAGATGAAGTTTTAAGAACAGAATTAAGCAAAGCCAATCCTCATATTAATACCAAGATTAATGAATGCAGTGATGAACTGGTAGAACCTTCTAGAGGGGCTATTGACTTGATTGCTACATTTAAGAATCTTCCGAAGAGCACGGGTGAAAGTTGTAGTATCGATGCTGATAACACAGCCAAGTCGGTTTTTGATACACAATTGGGACTTTCTTTAAGAAGTGATTTTCCTAGTAGCTCATGTAAGCCTGCAATGGAAGAAAGGCAAATATTGAACCATTCAACTGCGTCGGCCTTTTCTTGGTATAGCAGTAGTAAGTTGTTGCAGCCCCTTTTTCCATCTCAATCAATTACTTCTGCTAAATTATCAAGTGCCAGTTGTAATTCTCATGAGTCCCATAAGTCATCTGAAAATACAGATACTTATCATCAGCATGGTGATAAAATTCAAAATACACAGAACATGACCACTTTGGTCGCTCAGACTGGCCAAATTGAACCAAAATCACCAAACAATCAACTTGGATTCTTTTGTGCTGTTGGGGTTTCTTCTGATCATAACCCTACGGGACATGGCAATGCTTTCCCTAGTATGCCCTGTGCACAATCAGCTGTGCATCCCGTATGGACTCCGAAACCAGTGTCCCAGAAAGAAAATTCTCCATTTCCCACTAGTGCTTCTTCCCATTCCAACCCTGAAACTGACAATTCGGAACGTCATCGATGGTCAGATGATGCCACCAACACTTCTGATCAAAATGTAAATGATCAAAGCAAGTTGGATTGTGTTAGGCATGACTTTGCTGCTGCTGGTCAGAGTGCAAGTACTAGTTTTTACCTTGAAAATCATAATAGTAGCGGTGCCTATGGAAGCATAGGCAGTGGAAGTGATGCAAATGCTACTTCAGCTGTGGTAACTAAGAACAACCCAGAAAGTTTTGCTGATAGTAGTCAACCTAGTCATGATGGATTCAGAGGGACAGATTCTCATCGGAGCAGCGAAAGGGAAGCAGCTCTAACAAAGTTTCGGCTGAAGAGGAAGGAGAGATGCTACGAGAAGAAGGTACTGCAACCATGCTGTGACTGCTTGTAA 1941 0.4286 MQMQMQMQEDQIKNLKDENAPPGDMVVRWEKFLPRMALRVLLVEADDSTRQIISALLRKCSYKVAAVPDGLKAWETLKSKAPEIDLILTEVELPSISGFSLLTLIMEHDICKSIPVIMMSTNDSVSMVFKCMLKGAADFLIKPIRRNELRNLWQHVWRRHAISGSDQSLTLLQNKLEIAAENNAASNDSSGSVASPQKNNEYSGEKASDAQVTSPLKSSSKLSDIHTVKYEEASKFERESATHHKEAGEKSIMFVSDATRCNKTLNATGVRLNQGFDCDETENEDEVLRTELSKANPHINTKINECSDELVEPSRGAIDLIATFKNLPKSTGESCSIDADNTAKSVFDTQLGLSLRSDFPSSSCKPAMEERQILNHSTASAFSWYSSSKLLQPLFPSQSITSAKLSSASCNSHESHKSSENTDTYHQHGDKIQNTQNMTTLVAQTGQIEPKSPNNQLGFFCAVGVSSDHNPTGHGNAFPSMPCAQSAVHPVWTPKPVSQKENSPFPTSASSHSNPETDNSERHRWSDDATNTSDQNVNDQSKLDCVRHDFAAAGQSASTSFYLENHNSSGAYGSIGSGSDANATSAVVTKNNPESFADSSQPSHDGFRGTDSHRSSEREAALTKFRLKRKERCYEKKVLQPCCDCL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120990g00004 646 MobiDBLite consensus disorder prediction 496 515 - -
Stsc120990g00004 646 MobiDBLite consensus disorder prediction 592 606 - -
Stsc120990g00004 646 Gene3D - 36 286 - -
Stsc120990g00004 646 ProSiteProfiles Response regulatory domain profile. 39 157 IPR001789 GO:0000160
Stsc120990g00004 646 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 398 IPR045279 GO:0009736
Stsc120990g00004 646 MobiDBLite consensus disorder prediction 183 220 - -
Stsc120990g00004 646 MobiDBLite consensus disorder prediction 494 540 - -
Stsc120990g00004 646 SUPERFAMILY CheY-like 38 165 IPR011006 -
Stsc120990g00004 646 SMART REC_2 38 153 IPR001789 GO:0000160
Stsc120990g00004 646 Pfam Response regulator receiver domain 40 151 IPR001789 GO:0000160
Stsc120990g00004 646 CDD psREC_PRR 40 143 - -
Stsc120990g00004 646 MobiDBLite consensus disorder prediction 592 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120990g00004 Stsc-Chr120990 18680 23842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120990g00004 613 638 Response Regulator Gene Family AT5G24470 76.923 7.99e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc120990g00004 Response_reg 2.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120990g00004 K12130 - gmx:100779346 789.645