Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120989g00014 ATGGCAAATCACGGGTCAGACTATACGTATGAATATGATGTTTTTCTGTGCTTTCGACGCGGAGTCCACCGTGCGTTCATCGATCATCTCTGTAAAGCTTTGGACGGCATAGGTATCAAAACCTTCAAAGATGCCGCCGACAAGGAAGAAGAATCAGCGACGGAGAAGGAAGAAACCACCAGTCCGGATGTTCTTGAGAAAATCGAGAGATCCAGAACAGCAGTGGTTGTTTTCTGTAAAGACTTTCCATTTTCGACGAGGTGCCTGGATGAAGTTGGCAAGATCATGGAGTGTTATCAAGAAAAGAGGATGCAGGTGGTTGTGCCAATTTTCTACTACGGCGTGGGAGCCGCAGATGTGCGTTGGCAGAGGAAAGATACCACATATGGCGTAGCCTTTTCTCAACATCAAGAGAGATTATTGGGAAAAGAATCCGACAAGATCGAGACATGGCGGTCTGCTTTGCGTGGAGCATGCGGACTCATTGGAATAGGGTGCCACCAACACATGAAGGAAGATGAGCTTATCAGCATGATTGTTAAAGACGTCTCAGCTAGATTGCCTCCTCCTTTGCGTTTTCAAATCAAAGACGTGTTTGGATTAGATTCTCGTTTTGAGGAGCTGAAATCGAATCTAGATATAGGCAACAACAAAGCGGTTCGCATGCTAGCAATTTATGGACCTCCTGGCATTGGCAAGACCACATTTGCCGCGCATATTTTTAACAAACTTATTAGCAACGACGACCAATATGCCGCTGCAAGTTTTATTTCCAATATCAGAGATAGACCAATAGTCGAAGACCTCCAGTCGACCTTGTTAGTTGAGATGCGCGAAAAGAGAGAAAGCAAGAAGGGTGATACAAAAGATGGAGCCCAAGAAATCAAACGCAAACTCGGTGTTAAAAAGGTTCTCTTAGTGTTGGATGATGTTGATAAGATAGATCAGTTGAAATCGCTGGCCGGTGGGTGCGATTGGTTTGGTCCTGGCAGTAGGATTATTATAACAACAAGGCATCCAAATTTGCCTAATAGACATAGAGATCGTGATACAATTAAGAAATATCAAATGAGGGAGCTAAATCATGATGACTCTCTCAAACTCTTTTGTTGGCATGCTTTTGGCAAGAGCCAACTAGTAGAAAACTTTGCAGATTTTGTTACTCAAGCACTAAGGATTGCAAAGGGTTCTCCTTTGGCCTTAAAAGCACTAGGCACCGAATTGAAAGACCGTAGCTTAGAGGAGTGGGAAGTAAATTTGCAGAGATTTAGCACGGATTCAAAGGCTTTGGAATCTCTGCTGAGATAG 1308 0.4373 MANHGSDYTYEYDVFLCFRRGVHRAFIDHLCKALDGIGIKTFKDAADKEEESATEKEETTSPDVLEKIERSRTAVVVFCKDFPFSTRCLDEVGKIMECYQEKRMQVVVPIFYYGVGAADVRWQRKDTTYGVAFSQHQERLLGKESDKIETWRSALRGACGLIGIGCHQHMKEDELISMIVKDVSARLPPPLRFQIKDVFGLDSRFEELKSNLDIGNNKAVRMLAIYGPPGIGKTTFAAHIFNKLISNDDQYAAASFISNIRDRPIVEDLQSTLLVEMREKRESKKGDTKDGAQEIKRKLGVKKVLLVLDDVDKIDQLKSLAGGCDWFGPGSRIIITTRHPNLPNRHRDRDTIKKYQMRELNHDDSLKLFCWHAFGKSQLVENFADFVTQALRIAKGSPLALKALGTELKDRSLEEWEVNLQRFSTDSKALESLLR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120989g00014 435 Gene3D - 188 353 IPR027417 -
Stsc120989g00014 435 SMART AAA_5 219 358 IPR003593 GO:0016887
Stsc120989g00014 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 423 IPR027417 -
Stsc120989g00014 435 Gene3D - 9 187 IPR035897 -
Stsc120989g00014 435 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 158 IPR035897 -
Stsc120989g00014 435 Pfam NB-ARC domain 204 426 IPR002182 GO:0043531
Stsc120989g00014 435 Gene3D - 359 434 IPR042197 -
Stsc120989g00014 435 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 424 IPR044974 GO:0006952
Stsc120989g00014 435 SMART till_3 11 161 IPR000157 GO:0007165
Stsc120989g00014 435 PRINTS Disease resistance protein signature 298 312 - -
Stsc120989g00014 435 PRINTS Disease resistance protein signature 394 408 - -
Stsc120989g00014 435 PRINTS Disease resistance protein signature 222 237 - -
Stsc120989g00014 435 ProSiteProfiles TIR domain profile. 10 187 IPR000157 GO:0007165
Stsc120989g00014 435 Pfam TIR domain 12 184 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120989g00014 Stsc-Chr120989 81768 84579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120989g00014 220 408 WRKY Transcription Factor Family AT5G45050 32.804 3.32e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120989g00014 - - adu:107462955 543.888