Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120989g00013 ATGGCAAATCATAACGAGATATTCCTGAGTTTTAGAGGAGGCACTCGCTACCAATTCACGGATCATCTCTATGGTGCTTTGCGCCGAAATGGCATCGACACCTTCAGAGATAATGATCGTTTGAACACGGGGGATAAACTAGATTCTGTTCTTATGGAGGCAATCGAGAATTGCAAAATGGCCATAGCGGTGTTGTGTGAGGACTATGCTTCTTCGACATGGTGCCTTAAAGAGCTAGCCAAGATCATTGAGTGTCACGAAAAGCATGGGAAGCAGGTTCTTGCAATTATTTACAGAGTGGAACCTTCAGATGTGTGGAATCAGAAGGGTTCCTATGAGATAGCCTTGGCTAAACATGAGACCAGAGAAGACCCTGAGGATGTCAAAGCATGGCGATTGGCTTTGTCCAAACTACAAAAGTGGTTCGAAATAGAAGAGTTCTCCAAAGCAGGCGATGAGCAAAAGCTAACAAGATGGGTGCATTGCACGGAGCACATGAATGAACCAGAGTTTATCAAGAATATTGTTAGAGACATTGCTGGTAGACTGCCATTGCCAGAGCCAATTGATTATGAAGTTGGACTGGATACTCTCTGTGAAGAAGTAAAATCATTGCTAGATATTGAGTCTCATGACAATGTTCGCTTGTTGGGTATTTATGGAGCTGGTGGAATAGGCAAAACTAAATTGGCCAGATTTCTATTCGACAGGATCAATATGCAGTTTGAAGCTTCATGTTTTCTTGGTAAAGTCAAAGAAAAATCTGAAACTCTTGAAGGCTTAGAAAATCTGCAAAAGACACTTTTAGATGACATGGGTGAGGAAACAATAAGTCAGCTTGGCAGTGAATTCAAGGGGGGGAATGAAATCAAACGCAGGCTTCGCCACAAAAGAGTGCTTCTAGTTCTTGATGACGTGAATTCAATACCACAATTGGAATCACTTGCTGGAGGGCATGATTGGTTTGGTTCGGGCAGCAGAATCATCATAACAACAAGGGATACTGATGTGGTAGAGAAGCATGTGATGGGTGATGTTGTCAAAAATAATTATGAGGTGAAGGTGTTAAATGATGATGATTCCCTAGAACTATTTTCTTTGCATGCTTTCCGTATAAAGGAGCCTGCAAGGGGCTTTGAAAATGTTTCGAGAAGAGCAATACGTTGTGCAAAGGGCTTTCCATTGGCTTTAGAAGTAATAGGCTCCAATTTAGGAGGTATTACAAGTGTTGGTGGCTGGGAAGAGGAATTGGACAAGTATAGTATTGATCCAAGCATTCAAGAAGTTCTTGAAAGAAGTTACCATAGCTTGTATGAACTTGACCAGAAAACTTTCTTGGACATTGCTTCTTTCTTCAAAGGAGAGAAATGGGAGTATGTTAAAAGGGTGTTGAAAGCTTGTGACTTCTATCCAGTTGTGCGATTGTTCATTAGTAAATGTCTCATCACTTTAAATCAGAATGGTTGCTTGGATATGCACGATCTAGTGCAAGATATGGGCAAGGAGATTGTAATGAAAGAACCGTCAACAAACCGGAGCGATCGCAGCAGATTATGGTCTCATAAAGAGATTCTTCAAGTGCTCAAAGATGGCACGGGAAGTAGTTCAATTGAGGGCATAATGCTTCACCCTTCTACACTTGAAGAAGTAAACTATGAGATTAATAATGCCTTTGACGAGATGAAGAACCTTAGAATTCTAATTGTTCGGAATACAAAATTTTCAACAGGTCCAAGCCATCTTCCAAATAGTTTACGATTATTAGAGTGGAAAGGGTATCCATCAGAGTCATTCCCACTAGATTTTCATCCCCAAAGAATTGTTGACCTAAAGCTACCTCACAGTGCTCTTAAATTGGAAAGGTCATTTCAGGTATTTGAGGATTTGACATTTATCAATCTCTCCCAATGTCAATTCATTACTCAAGTCCCAAATATGTCTGGAGCTAAAAGCCTGAGAGTCCTCACCCTTGACAAATGCAATAATCTAGAAGGATTTGATGGATCCATTGGATTTATGCCAAAACTTGTCTATTTGAGTGCTTCACAGTGCACTAAGCTCAAAAGTTTTGTGCCAGAAATGTATTTGCCATCTCTCGAAGTGCTTTCGTTTTACTTTTGCAAAAGCCTCCAAAGCTTCCCAGAAATCAAGCAAGAGATGGACAAACTATTAAAGATTAACTTGGTAAATTCTGCAATCGAGGAGTTCCCAGATTCCGTGGGTAATCTTACAGGGCTTGAGCATATAGACATCTCTAACTCTAAAAGACTCCGGTGTCTACCAAGTAGCTTCTTCAAATTGCCAAAACTTTTCACATTGACAATAGAAGGATGTTCTGTGCTTGGAAAATCATTTCAAAGGTTTAAAGGACACAGCAGTCCAAATATAAGGAGACTGAATTTTAGTGATGCTAATCTATCGGATGAAGATTTTCATCCAATTTTTCAGGTTCTTCAAAATTTGGAAGACATCAATGTATCACACAATGATTTCACATCCTTTCCAAATAGCATCAAAGAATCTTTACACTTGAAAAGTATTGATGTGAGTTATTGTAAAAGTCTTGAGGTAATTCCAGAACTGCCATCAAGCGTTCAAAAATTAGATGCAAGATATTGCCTATCCTTGTCTTCAAAGTCCTCAACCATGCTATTGTCCAAGATTTTACAAGAGACTCAAAGAATTGAAGTTGTGATGCCAAAATTGAAGACACACAATTTGTTTGACTACCATGGCAAAAAAGATAATCCACTGTTCTGGGCTCGGCGAAAGTTCCCTGTTATTGCTTTAGCGTTGACGTTTGGGAAAGCCACTGGCAAAGATATTGATAAGACATTGATGGAGTCTCTAGAATACTGGCCCCAGGGTGATTCTTTAAAATCCTACACTGTTGGTCTCAACTTGTTTATAGGAGGCCAACAAATATTTCGAAAAAAGTCCAAATATTTCAATGTAGGGGAAGATCATGTGTTAATATGTGATCTGCGGGCTTTGTTTAATGATGAAGAGTGGCATGATCTTGATGCATATCTTGGAGATGATTGGAAACCCATTCATGTTGTATGTGAATCAACCTTAACTCTGAATCATTGGGGAGTTCATGTTCACAAGGGAGAGACAAACATGGATGATATTTCTTTCAAGCATCATCATCCCAACCTCAAATTGGTTCCAGAAAGAAGTCCAGAAGAATTTCAACAAAGAATTAGACAAGTGGTAGATAATTTGCATCCAACTGAAACATTTGGCAATAAGTATTTGTCTCTTGCTGGTTTGGAAGAAAATCCATGTTTTTCGAAGGCATTGGTGAGGTCTCACATGATGGCTAAGGCTAACGAAGCTTCTTCGTCTTCTAACTATGGTGCGAGTTTGAGGAAAGATTCCGAAGAATCTAACTGGGATGTGTTGAAGTTATTAGAGTTGATCAAGGAATGTCTGCCAAAAGATATTGCCAGTTCACACGATGCTCAAAGTCTAATAAAATTTGCAGAAGAATTGTTTGATGCACGTGCGCAATTTACAATGGAGAAAGGCTGCAACACTTTGAAACTTGGCTTGCCGATTGTTTTAGAGAAACACCATAAGTTTTCACCTCCAACCTATCGTTACTTGGGAAGACTAGATTTAAAAGATGCAGATGATCCATTATTCAAAGCAGTGATAAGGAGAGCGCTCCAACAACGATGGAAAACTGAAAACCTCATCAAAGGAAGTATGTACAAGACGCTTGTTCCCGTTGTTCTATTGAATTTGAAACGGCAGCGTCCATCCTTATGGGACCAACTGTCACAGATGGAACAATTCGAGAATGATCCTGTGTTGGAAGAATTGTTAAGAACGATAGAGAAAGATGCTATGGAGTGTGATAAATCATATGGTGATTTGAAGGCATATATTACTTATATTAATGCAAGAGAAATGGTTTCTGAAGAATATTTGCTGGAAGCAGCGCAAATGAGAGCATATGAGAATATGGAAGATGGAGTGCTGTCAGAGTGGGGTAAGGCAGAATTGGAATTATTAGACAAGGCCAAATCAAGTATGGGAGGATCCATTAGTGGGGCTAGTACTAAGATGACATCTTATGGGACAATAAGATTGGCACAAGAAGATCAAGACCCTCATGATAAGTTGTGGTGGCGCCGGATTGCAAGGTATTTTTATTTCATTCTGAATGGTCTAAGCTGTTTGTGTATTTGA 4200 0.395 MANHNEIFLSFRGGTRYQFTDHLYGALRRNGIDTFRDNDRLNTGDKLDSVLMEAIENCKMAIAVLCEDYASSTWCLKELAKIIECHEKHGKQVLAIIYRVEPSDVWNQKGSYEIALAKHETREDPEDVKAWRLALSKLQKWFEIEEFSKAGDEQKLTRWVHCTEHMNEPEFIKNIVRDIAGRLPLPEPIDYEVGLDTLCEEVKSLLDIESHDNVRLLGIYGAGGIGKTKLARFLFDRINMQFEASCFLGKVKEKSETLEGLENLQKTLLDDMGEETISQLGSEFKGGNEIKRRLRHKRVLLVLDDVNSIPQLESLAGGHDWFGSGSRIIITTRDTDVVEKHVMGDVVKNNYEVKVLNDDDSLELFSLHAFRIKEPARGFENVSRRAIRCAKGFPLALEVIGSNLGGITSVGGWEEELDKYSIDPSIQEVLERSYHSLYELDQKTFLDIASFFKGEKWEYVKRVLKACDFYPVVRLFISKCLITLNQNGCLDMHDLVQDMGKEIVMKEPSTNRSDRSRLWSHKEILQVLKDGTGSSSIEGIMLHPSTLEEVNYEINNAFDEMKNLRILIVRNTKFSTGPSHLPNSLRLLEWKGYPSESFPLDFHPQRIVDLKLPHSALKLERSFQVFEDLTFINLSQCQFITQVPNMSGAKSLRVLTLDKCNNLEGFDGSIGFMPKLVYLSASQCTKLKSFVPEMYLPSLEVLSFYFCKSLQSFPEIKQEMDKLLKINLVNSAIEEFPDSVGNLTGLEHIDISNSKRLRCLPSSFFKLPKLFTLTIEGCSVLGKSFQRFKGHSSPNIRRLNFSDANLSDEDFHPIFQVLQNLEDINVSHNDFTSFPNSIKESLHLKSIDVSYCKSLEVIPELPSSVQKLDARYCLSLSSKSSTMLLSKILQETQRIEVVMPKLKTHNLFDYHGKKDNPLFWARRKFPVIALALTFGKATGKDIDKTLMESLEYWPQGDSLKSYTVGLNLFIGGQQIFRKKSKYFNVGEDHVLICDLRALFNDEEWHDLDAYLGDDWKPIHVVCESTLTLNHWGVHVHKGETNMDDISFKHHHPNLKLVPERSPEEFQQRIRQVVDNLHPTETFGNKYLSLAGLEENPCFSKALVRSHMMAKANEASSSSNYGASLRKDSEESNWDVLKLLELIKECLPKDIASSHDAQSLIKFAEELFDARAQFTMEKGCNTLKLGLPIVLEKHHKFSPPTYRYLGRLDLKDADDPLFKAVIRRALQQRWKTENLIKGSMYKTLVPVVLLNLKRQRPSLWDQLSQMEQFENDPVLEELLRTIEKDAMECDKSYGDLKAYITYINAREMVSEEYLLEAAQMRAYENMEDGVLSEWGKAELELLDKAKSSMGGSISGASTKMTSYGTIRLAQEDQDPHDKLWWRRIARYFYFILNGLSCLCI 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120989g00013 1399 PRINTS Disease resistance protein signature 390 404 - -
Stsc120989g00013 1399 PRINTS Disease resistance protein signature 741 757 - -
Stsc120989g00013 1399 PRINTS Disease resistance protein signature 293 307 - -
Stsc120989g00013 1399 PRINTS Disease resistance protein signature 216 231 - -
Stsc120989g00013 1399 SUPERFAMILY L domain-like 551 922 - -
Stsc120989g00013 1399 ProSiteProfiles TIR domain profile. 3 183 IPR000157 GO:0007165
Stsc120989g00013 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 448 IPR027417 -
Stsc120989g00013 1399 SUPERFAMILY "Winged helix" DNA-binding domain 425 529 IPR036390 -
Stsc120989g00013 1399 Gene3D - 2 179 IPR035897 -
Stsc120989g00013 1399 Gene3D Ribonuclease Inhibitor 720 898 IPR032675 -
Stsc120989g00013 1399 Gene3D Ribonuclease Inhibitor 545 719 IPR032675 -
Stsc120989g00013 1399 Pfam TIR domain 7 179 IPR000157 GO:0007165
Stsc120989g00013 1399 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 138 IPR035897 -
Stsc120989g00013 1399 Gene3D - 355 438 IPR042197 -
Stsc120989g00013 1399 SMART till_3 4 141 IPR000157 GO:0007165
Stsc120989g00013 1399 Gene3D - 180 345 IPR027417 -
Stsc120989g00013 1399 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 715 IPR044974 GO:0006952
Stsc120989g00013 1399 Coils Coil 547 567 - -
Stsc120989g00013 1399 Pfam NB-ARC domain 198 418 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120989g00013 Stsc-Chr120989 72836 80673 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120989g00013 19 808 WRKY Transcription Factor Family AT4G12020 31.181 1.76e-84 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120989g00013 - - aip:107611494 1995.32