Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120989g00012 ATGGCAAATCACGGGTCAGACTATACGTATGAATATGATGTTTTTCTGTGCTTTCGACGCGGAGTCCACCTAAAGTTCATCGATTATCTCTTTGAAGCTTTGGACGGCATAGATATCAACACCTTCAAAGATGCCGACAATGAAGAATCGCCGACGGAGAAGGAAGAAACGAGTCCGGATGTTCTTGAGAAAATCGAAAGATCCAGAATAGCGGTGGTTCTTTTCTGTAAAGATTTCCCATATTCCAGAAGGTGCCTGGACGAAGTTGCTAAGATCATGGAGTGTTATGAGAAAAAGACGATGAAGCTGGTTGTGCCACTTTTCTACCGCGGCACGAGTGTTACAGATGTATGTCAGCAGGAGAAAGGTACGCCATATGAGAAAGCCTTTTCTCAACATGAACTGGGAAAAGAATCGGACAAGATCAACACATGGAAGTCTGCTTTGCAAAGAATCGGCGATCTCAGCGGAATAAACTGCCACAAAGAGTATGAAACTAAGCTTATCAGCAGGATTGTTAAAGGCATCTCTGCTAGATTGCCACCTTTGCGTTTACAAATCAAAGACGTAACTGGATTAGATTCTCGTTTTGATGAGGAAGTGAAATTGCTTCTAGATATAGGCAACAATGACGAGGTTCACATGCTAGCAATTTATGGACCCCCTGGCATTGGCAAAACCACATTTGCTGCACATATTTTTAACAAAATTATTAGCAACGACGACCAATTTACAGCTGCAAGTTTTATTTCCAATATCAGAGATAAACCAAAATTCGAAGATCTCCAATCGACGTTGTTAGATGAGATGTGTGAAGAGAGAAAAACCAGAGAGAAGGATGATACAAATGAGGAAGACGGAGAAATAATCAAAGACAAACTCGGTGGTAAAAAGGTTCTCTTAGTGTTGGATGATGTTAATAAGATAGAACAGTTGGAATCGCTGGCCGGCGATTGCAACTGGTTTGGTCTTGGCAGTAGGATTATTATAACAACAAGGGATCCAAATTTGCTGAATACACATAGAGATCGTGATAAAATTAAGAAATATCAAATGAGGGAGCTAAATGATGATGATTCTCGCAAACTCTTTTGTTGGTATGCATTTGGCAATAGCCAACCAGCAAAAGACTTTGCAGATTTTACTACCAAGGCACTGAGTATAGCAAGGGGCTCTCCTTTGGCCTTAAAAGCACTGGGCATAAGATTGAAGGACTATGAGTTAGAGGAGTGGGAAATGGAATTGGACAAATATAACAAGGTTCCAGGTGCTTTGGAATTTCTGCTGAAATCTTTTGGAGTACACAAATAA 1311 0.4066 MANHGSDYTYEYDVFLCFRRGVHLKFIDYLFEALDGIDINTFKDADNEESPTEKEETSPDVLEKIERSRIAVVLFCKDFPYSRRCLDEVAKIMECYEKKTMKLVVPLFYRGTSVTDVCQQEKGTPYEKAFSQHELGKESDKINTWKSALQRIGDLSGINCHKEYETKLISRIVKGISARLPPLRLQIKDVTGLDSRFDEEVKLLLDIGNNDEVHMLAIYGPPGIGKTTFAAHIFNKIISNDDQFTAASFISNIRDKPKFEDLQSTLLDEMCEERKTREKDDTNEEDGEIIKDKLGGKKVLLVLDDVNKIEQLESLAGDCNWFGLGSRIIITTRDPNLLNTHRDRDKIKKYQMRELNDDDSRKLFCWYAFGNSQPAKDFADFTTKALSIARGSPLALKALGIRLKDYELEEWEMELDKYNKVPGALEFLLKSFGVHK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120989g00012 436 PRINTS Disease resistance protein signature 293 307 - -
Stsc120989g00012 436 PRINTS Disease resistance protein signature 389 403 - -
Stsc120989g00012 436 PRINTS Disease resistance protein signature 215 230 - -
Stsc120989g00012 436 Gene3D - 9 181 IPR035897 -
Stsc120989g00012 436 Gene3D - 354 428 IPR042197 -
Stsc120989g00012 436 Pfam NB-ARC domain 206 417 IPR002182 GO:0043531
Stsc120989g00012 436 Gene3D - 182 348 IPR027417 -
Stsc120989g00012 436 SMART till_3 11 155 IPR000157 GO:0007165
Stsc120989g00012 436 Pfam TIR domain 12 189 IPR000157 GO:0007165
Stsc120989g00012 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 421 IPR027417 -
Stsc120989g00012 436 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Stsc120989g00012 436 ProSiteProfiles TIR domain profile. 10 180 IPR000157 GO:0007165
Stsc120989g00012 436 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 425 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120989g00012 Stsc-Chr120989 67987 71464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120989g00012 212 425 WRKY Transcription Factor Family AT5G45050 29.680 3.20e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120989g00012 - - adu:107462955 557.37