Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120989g00009 ATGCCATCCTCGTTACGCGGCTTCGCTTCTGCCACAGTCTTCTCCGTTCCGCCCAAGACCGTTCAGGTTCGATGGCTTTTGGTGGTAGTGTCTGCAATACTTCCACCCTTGCCACTTCAAACCCTTTGCCTTTGCGTTTGCTTCGATCTTCGAAGCTACCGGTTGCATCGCCATAGCTGTTGGTATGAACCAGAGTTTATCAAGAATATTGTTAGAGACACTGCTAGAACATTACCATTGCCTGAACCAACCCAGCATGTAGTTGGACTGGAAACTCGCTGTGTAGAAGTAAAATCACTGCTAGATATTGAGTCTAATGACAATGTTTACATGTTGGGAATTCATGGACCCGGAGGAATAGGCAAAACCACATTGGCCAGATGTCTATTCGACAAGATCAACCGAAATTTTGAAGCTTCATGTTTTCTTCGTGATGTCAGAGAAAAATATGAACGCCGTGGAGGCTTAGAAAGTCTGCAAAAGACACTTATAAAGGACATGGGTGAGGAGCTAATTACTGAGCTTGGCAGTGAATTTAAGGGGGGATATGAAATCAAACGCATGCTTTGCCACAAAAGAGTACTATTAGTTCTTGATGATGTGAATTCAATAACACAATTGGCATCGCTTGCTGGAGGGCATGATTGGTTTGGTCCGGGTAGTAGAATCATTATAACAACAAGGGATACTGATGTGGTAGACAAGCATGTGATGGGTCCTGTTGTCACCAACAAATACAAGGTGGAGTTAAATGGTGATGATTCCCGAGAACTATTTTCTTGGCATGCTTTTAGTAGCAAGGAGCCTGCACAGGGCTTTGAAAATGTTTCAAGAAATGCAATAAGTTATGCAAAGGGCTTTCCGTTGGCTTTAGAAGTGATAGGCTCCCATTTAAGGGGTTTTGAAAGTGTGGATAGATGGGAAAGGGAACTGGACAAGTATAGCATTGATCCAAGCATTCAAGAAGTACTTCAAAGAAGCTACAATAGCTTGTATGAACTTGACCAGAAAACTTTCTTGGACATTGCTTGTTTCTTCAAAGGAGAGAAATGGGAGTATGTTAAAAGGGTATTGAAAGCTTGTGACTTCTATCCAGTTGTGCGATTGTTCATTAGTAAATGTCTCATCACTGTAAATCAAAATGGCTGCTTGGATATGCATGATCTAGTGCAAGACATGGGCAAGGAGATTGTAATGAACGAGCCGTCAACAAACCCGGGTGAACGCAGCAGATTATGGTCTCATGAAGACATTCTTCAAGTACTCAAAGATGGCACAGGAAGTAGTTCAATTGAAGGCATAATGCTTCACCCTTCTACACTTGAAGAAGTAAACTATGAGATTAATAATGCCTTTGACAAGATGGAGAACCTCAGAATTCTAATTGTTCGGAATACAAAATTTTTAACAGGACCAAGTCATCTTCCAAATAGTTTACGATTATTAGAGTGGAAAGGGTATCCATCAGAGTCATTCCCACTAGATTTTCATCCTCACAGAATTGTTGACCTCAAGCTACCTCACAGTTCTCTTAAATTGCAAAGGTCCTTTCAGGTATTTGAGGATTTGACATTTATCAATCTTTCCCAATGTCAATTCATTATTAAAGTTCCAAATATGTCTGGAGCTAAAAGCCTAAGAGTTCTCACCCTTGATAAATGCAATAAGCTGGAAGGATTTGACGAATCCATTGGATTTATGCCAAACCTTGTGTATTTGAGTGCTTCACAATGCACTAAGCTCAAAAGTTTCGTACCAGAAATGTATTTGCCATCTCTTGAAGTGCTTTCATTTTACTTTTGTAAAAGCCTCCAAAGCTTCCCAGAAATCAAGCAAGAGATGGACAAATCATTAAAGATTAACTTGGTAAATTCTGCAATCGAGGAGTTCCCAGATTCCATTGGTAATCTTACAGGCCTTGAGCACATAGACATCTCTAATTCCAAAAGACTCCGTTATCTACCAAGTAGCTTCTTGAAGTTGCCAAAACTTTTCACATTGACAATAGAAGGATGTTCTCTGCTTGTAAGATCATTTGAAAGGTTTAAAGGACACAGCAGTCCAAATATAAGGAGACTGAATTTTGGTGATGCTAATCTATCAGATGAAGATCTTCATCCAATTATTCAGGTTCTTCAAAACCTAGAAGACATCAATGTATCACACAATGATTTTGCATCCCTTCCAAATTGCATCGAAGGATCTTTGCAGATAAAAAGTATTGATGTGAGTTATTGTAAGAGTCTTAAGACAATTCCAGAACTACCATCAAGCATTCAGAAAATAGATGCAAGATATTGCCTATCCTTATCTTCAAAGTCCTCAACCATGCTATTGTCCAAGATTTTACTAGAGACTCAAAGAATTGAAGTTGTGATGCCAAAAATGAAGATACCCAATTGGCTTGACTACAATTGCAGCAAAGGTAATCCGTTGTTTTGGGCACGGCGAAAGTTCCCTGTTGTTGCTTTAGCATTGACGTTTGGGGGAGCCACTGGCCGTGATATTGATAAGATATTGATGGAGTCTCTAGAATTCTGGCCTCAGGGTGATTCATCAAAATCCTACACCGTTGGCCTCAACTTGTTTATAGCAGGCCAACAAATTTTTTGGAAAGAGTCCAAATATTTCAATGTTGGGGAAGATCATGTATTACTTTTTGATCTACGAGCTTTGTTCAGTAACGAGGAGTGGCATGATCTTGATGCATATCTTGGAGATGATTGGAAAGCCATTCATGTTGTATGTGAATCAAACTTAACTCTGAATCGTTGGGGAGTTCATGTTTACAAGAGAGAGACAAACATGGATGATATTTCTTTCAAGCATCATCCCAACCTCAAATTGCCAACCGAGTTGGTTCCAGAAAGAAGTCCACAAGAAATTCGGCAAAGAATTGGACAAGTGATAGATAATTTGCATCCAACTGAAACATTTGGCAATAAGTATTTGCCTCTTGCTGGTCTGGAAGAAAGTCCATGTTTTTCCAAGGCATTGGTGAGGTCTTACAGGATGTCTAAGGCTGATGAAGCTTCTTCGTCTTCTAACTATGGGGCAAGTTTGAGGAAAGAATCCGAAGAATCTAATTGGGACGCGTTGAAGTTATCAGAGTTGATGGAGGAATGTGTGCCAAAAGATATTGCTGGCTCATACTCTGCTCAAATACAAGTTGTAAAAAAATTTGCAGAAGAATTGTTTGAGGCACGTGCACAATTTATGATGGAGAAAGGGTGTGACACCTTGAAACTTGGCATTCCGATTATTTTAGAAGAACACCATAAATTTTCACCTCCAACCTATCGTTATTGGGGAAGACTAGATTTAAAACATGCAGATGATCCAATATTCAAAGCAGTGATAAGGAGGGCATTCCAACAACGATGGAGAATTGAAAACCTCCTCAAAGGATGTATGTACAAGAAGATTGTTCCTGTTGTTCTATTGAATTTGAAACGCCAGCGTCCATCCTTATGGGACCGATTGTCACAGATGGAAGAATATGATAATGATCCTGTGTTGGAAGAATTGTTAAGAAGGATAGAAAAAGATGCTATGGAGTGTAATAAATCATATGGTGATTTGAAGGCTTGTATTACTTATATTGATGGAAGTGAAATGGTTTCTTATGAATATCTGGTGGAAGCAATTTATATGAGAGCATATGAGAATATGGAAGATGGAGTCATGTCTGACTGGGGTAGGGCAGAATTGGAATTATTAGACAAGGCCAAACTAAGTATGAGAGGATCAATGTTTGGTTGGGGAATGCCTGAGATTAGTGGAGCTAATACTAAGAAGACATCTTATGGGACAATAAGAGTGGCACCAGAAGATCAAACTCATGATAATAATAATCCAAGGCAACATAGCTGTGGTGGAGACAGATTCCAAGCTCTAGCCATCAAGGTGAGAATCCTAGTGCTTCTTCCATAA 3933 0.3961 MPSSLRGFASATVFSVPPKTVQVRWLLVVVSAILPPLPLQTLCLCVCFDLRSYRLHRHSCWYEPEFIKNIVRDTARTLPLPEPTQHVVGLETRCVEVKSLLDIESNDNVYMLGIHGPGGIGKTTLARCLFDKINRNFEASCFLRDVREKYERRGGLESLQKTLIKDMGEELITELGSEFKGGYEIKRMLCHKRVLLVLDDVNSITQLASLAGGHDWFGPGSRIIITTRDTDVVDKHVMGPVVTNKYKVELNGDDSRELFSWHAFSSKEPAQGFENVSRNAISYAKGFPLALEVIGSHLRGFESVDRWERELDKYSIDPSIQEVLQRSYNSLYELDQKTFLDIACFFKGEKWEYVKRVLKACDFYPVVRLFISKCLITVNQNGCLDMHDLVQDMGKEIVMNEPSTNPGERSRLWSHEDILQVLKDGTGSSSIEGIMLHPSTLEEVNYEINNAFDKMENLRILIVRNTKFLTGPSHLPNSLRLLEWKGYPSESFPLDFHPHRIVDLKLPHSSLKLQRSFQVFEDLTFINLSQCQFIIKVPNMSGAKSLRVLTLDKCNKLEGFDESIGFMPNLVYLSASQCTKLKSFVPEMYLPSLEVLSFYFCKSLQSFPEIKQEMDKSLKINLVNSAIEEFPDSIGNLTGLEHIDISNSKRLRYLPSSFLKLPKLFTLTIEGCSLLVRSFERFKGHSSPNIRRLNFGDANLSDEDLHPIIQVLQNLEDINVSHNDFASLPNCIEGSLQIKSIDVSYCKSLKTIPELPSSIQKIDARYCLSLSSKSSTMLLSKILLETQRIEVVMPKMKIPNWLDYNCSKGNPLFWARRKFPVVALALTFGGATGRDIDKILMESLEFWPQGDSSKSYTVGLNLFIAGQQIFWKESKYFNVGEDHVLLFDLRALFSNEEWHDLDAYLGDDWKAIHVVCESNLTLNRWGVHVYKRETNMDDISFKHHPNLKLPTELVPERSPQEIRQRIGQVIDNLHPTETFGNKYLPLAGLEESPCFSKALVRSYRMSKADEASSSSNYGASLRKESEESNWDALKLSELMEECVPKDIAGSYSAQIQVVKKFAEELFEARAQFMMEKGCDTLKLGIPIILEEHHKFSPPTYRYWGRLDLKHADDPIFKAVIRRAFQQRWRIENLLKGCMYKKIVPVVLLNLKRQRPSLWDRLSQMEEYDNDPVLEELLRRIEKDAMECNKSYGDLKACITYIDGSEMVSYEYLVEAIYMRAYENMEDGVMSDWGRAELELLDKAKLSMRGSMFGWGMPEISGANTKKTSYGTIRVAPEDQTHDNNNPRQHSCGGDRFQALAIKVRILVLLP 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120989g00009 1310 Coils Coil 441 461 - -
Stsc120989g00009 1310 Gene3D - 249 332 IPR042197 -
Stsc120989g00009 1310 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 59 609 IPR044974 GO:0006952
Stsc120989g00009 1310 PRINTS Disease resistance protein signature 284 298 - -
Stsc120989g00009 1310 PRINTS Disease resistance protein signature 111 126 - -
Stsc120989g00009 1310 PRINTS Disease resistance protein signature 188 202 - -
Stsc120989g00009 1310 PRINTS Disease resistance protein signature 635 651 - -
Stsc120989g00009 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 342 IPR027417 -
Stsc120989g00009 1310 SUPERFAMILY L domain-like 444 776 - -
Stsc120989g00009 1310 Pfam NB-ARC domain 96 333 IPR002182 GO:0043531
Stsc120989g00009 1310 Gene3D Ribonuclease Inhibitor 439 616 IPR032675 -
Stsc120989g00009 1310 Gene3D Ribonuclease Inhibitor 617 788 IPR032675 -
Stsc120989g00009 1310 SMART AAA_5 108 253 IPR003593 GO:0016887
Stsc120989g00009 1310 SUPERFAMILY "Winged helix" DNA-binding domain 319 423 IPR036390 -
Stsc120989g00009 1310 Gene3D - 66 238 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120989g00009 Stsc-Chr120989 41843 48273 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120989g00009 63 718 WRKY Transcription Factor Family AT4G12020 32.216 7.90e-76 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120989g00009 - - aip:107611494 1911.35