Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120989g00006 ATGATTGTTAAAGACGTCTCTGCTAGATTGCCTCCTCTGCGTTTACAAATCAAAGAAGACGCCATAGTTGGATTAGATTCTCATTTTGATGAGGAGGAGGTGAAATTGTTTCTAGATAAAGACAACAATGATGCGGTTCACATGCTAGCAATTCATGGACCTCCTGGCATAGGCAAAACAACATTTGCTGCGTATATTTATAACAACATTATTAGCAACGATAACCAATATACCGCTGCAAGTTTTATTTCTAATATCAGAGAAAAATCAAAAGTAGAAGATCTCCAGTCAATGTTGTTAGCTGAGATGGGCGAGAAGAGAGAAAGCAGTGAAGGTGACACAAATGATGGAGCTGAAGAAATCAAACGCAAACTCGGTACTAAAAAGGTTCTCTTAGTGTTGGATGATGTTGATAAGATAGATCAGTTGAAATGGTTGGCCGGTGGCCACGATTGGTTTGGTCCTGGTAGTAGGATTATTATAACAACAAGGCATCCAACTTTGCTCAACAGACATAGGGATCGTGATAAAATTAATAGATATCAAATGACGGAGCTAAATCCTGAACACTCTCTCAAACTCTTTTATCAATATGCATTCGGTGAGAGTCAACCAACTGAAAACTTTGCAAATTTTGCTACTCAGGCGTTAAGTATTGCAAAGGGTTCTCCTTTGGCCTTAAAAGCACTAGGCACCGAATTGAAAGACTGTAGCTTAGACGACTGGGACACGAATTTGCAGAGATTTAGCAGGGATTCAAAAGCTTTCGATTTTTTGCTGAGACAGACACAAAAGAATTGTTTGTTTGATTGA 813 0.3887 MIVKDVSARLPPLRLQIKEDAIVGLDSHFDEEEVKLFLDKDNNDAVHMLAIHGPPGIGKTTFAAYIYNNIISNDNQYTAASFISNIREKSKVEDLQSMLLAEMGEKRESSEGDTNDGAEEIKRKLGTKKVLLVLDDVDKIDQLKWLAGGHDWFGPGSRIIITTRHPTLLNRHRDRDKINRYQMTELNPEHSLKLFYQYAFGESQPTENFANFATQALSIAKGSPLALKALGTELKDCSLDDWDTNLQRFSRDSKAFDFLLRQTQKNCLFD 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120989g00006 270 SMART AAA_5 45 184 IPR003593 GO:0016887
Stsc120989g00006 270 Pfam NB-ARC domain 32 250 IPR002182 GO:0043531
Stsc120989g00006 270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 250 IPR027417 -
Stsc120989g00006 270 PRINTS Disease resistance protein signature 124 138 - -
Stsc120989g00006 270 PRINTS Disease resistance protein signature 48 63 - -
Stsc120989g00006 270 PRINTS Disease resistance protein signature 220 234 - -
Stsc120989g00006 270 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 251 IPR044974 GO:0006952
Stsc120989g00006 270 Gene3D - 16 179 IPR027417 -
Stsc120989g00006 270 Gene3D - 185 262 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120989g00006 Stsc-Chr120989 24872 25684 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120989g00006 33 234 WRKY Transcription Factor Family AT5G45050 31.034 1.68e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120989g00006 - - adu:107462955 316.62