Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120988g00015 ATGGGGAAAGCTACAAGGTGGTTGAAGGGGCTATTAGGAATGAAGAAGGAGAATAAAGAGAATAACAATAAGAATCAACATCATCACATTGAAAATTCAGGTTCATTGGCAAAAACAACAACAATGGCTTCTTCTTTTTCTTCTCCTTGTGACAAGAAAGAGAAGAGAAGATGGAGTTTTGCTAAGCAAGTAGGGAAGGATAATAATAATAATAATAATAATGGAAATAATAATGTTGCTCCTTCCACTGGTGCTGCTTTGGATTCTAATTCTTCACCTTCTTCTGAAGGTGCTTGGATTAGATCCTATATTGCTGACACTGAGAGTGAGCAGAACAAGCATGCAATTGCTGTGGCAGCTGCCACTGCCGCGGCTGCGGATGCCGCCGTGGCGGCAGCGCAGGCGGCGGTGGCAGTTGTAAGGCTGACAAGCCAAGGGAGAGGCTCATTGTTCGGTGGCAGCAGAGACAAGTGGGCTGCTGTAAAAATCCAAACTTTCTTCAGAGGCTATTTGGCAAGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGTTTTCTAGTTAGAAAGAGGGCTGCGGCAACTCTTCACAGTATGCAGGCTCTTATTCGAGCTCAGGCCGCCGTCCGGTCGCAGCGCGCTCGCCGTTCCATGAGCAAAGACAATAGGTTCCTCCAGGAAGTTCTTGCAAGAAAATCTCTGGAACGGTTTGATGAAACAAGGAGTGAATTCCACAGCAAAAGGATGATACCAACATCTTATGAAGCATCATTCAATGGATTTGATGAGTCTCCAAAAATTGTTGAAATTGACACTTACAAGACTAGGTCAACAAGGTCAAGGCGTTATACCTCTACAATGTCCGAATGTGGCGAGGATCCTCCTTACCATGCTATCTCATCCCCTCTTCCGTCTCCGGTCCCCGGCCGAATCTCGGTCCCTGATTGCCGCCACATTCAAGATTTCGATTGGTACTTCAACCCCGACGAATGTAGGTACTCGACGGCCCACAACACCCCTCGATTCACAAACTACACGCACCCTAAAAACGCGCCGGCCAAGAGTGTTTGTGGAGGGGACACATACTTTAGACCTTATTCAAATTTCCCAAATTACATGTCAAATACTCAATCTTTTAATGCAAAGCTAAGGTCTCATAGTGCTCCAAAGCAAAGGCCTGAGCCAAAGAAGAGGCTTTCACTCAATGAAATGATGGCAGCAAGGAACAGCATAAGTGGTGTTAGAATGCATAGGCCATCCAATTTTCAAGGTCAAGAATCATGGANNNNNNNNNNGGGTTTTGGTTTTGGTTGGTTAATTGATGTGCCCTATGTCAGTTTCAGAATCTAA 1368 0.4488 MGKATRWLKGLLGMKKENKENNNKNQHHHIENSGSLAKTTTMASSFSSPCDKKEKRRWSFAKQVGKDNNNNNNNGNNNVAPSTGAALDSNSSPSSEGAWIRSYIADTESEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLFGGSRDKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGFLVRKRAAATLHSMQALIRAQAAVRSQRARRSMSKDNRFLQEVLARKSLERFDETRSEFHSKRMIPTSYEASFNGFDESPKIVEIDTYKTRSTRSRRYTSTMSECGEDPPYHAISSPLPSPVPGRISVPDCRHIQDFDWYFNPDECRYSTAHNTPRFTNYTHPKNAPAKSVCGGDTYFRPYSNFPNYMSNTQSFNAKLRSHSAPKQRPEPKKRLSLNEMMAARNSISGVRMHRPSNFQGQESWXXXXGFGFGWLIDVPYVSFRI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120988g00015 455 Pfam Protein of unknown function (DUF4005) 342 420 IPR025064 -
Stsc120988g00015 455 Gene3D - 98 182 - -
Stsc120988g00015 455 MobiDBLite consensus disorder prediction 63 93 - -
Stsc120988g00015 455 Pfam IQ calmodulin-binding motif 158 177 IPR000048 GO:0005515
Stsc120988g00015 455 Pfam IQ calmodulin-binding motif 183 197 IPR000048 GO:0005515
Stsc120988g00015 455 MobiDBLite consensus disorder prediction 16 93 - -
Stsc120988g00015 455 ProSiteProfiles IQ motif profile. 180 207 IPR000048 GO:0005515
Stsc120988g00015 455 PANTHER IQ-DOMAIN 5-RELATED 1 408 - -
Stsc120988g00015 455 SMART iq_5 178 199 IPR000048 GO:0005515
Stsc120988g00015 455 SMART iq_5 155 177 IPR000048 GO:0005515
Stsc120988g00015 455 ProSiteProfiles IQ motif profile. 204 233 IPR000048 GO:0005515
Stsc120988g00015 455 ProSiteProfiles IQ motif profile. 156 184 IPR000048 GO:0005515
Stsc120988g00015 455 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120988g00015 Stsc-Chr120988 75322 78240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120988g00015 1 422 IQD Protein Family AT3G16490 49.541 6.01e-99 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120988g00015 - - gmx:100797686 553.518