Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120988g00009 ATGATGGATGAAAGTGGAAGAATGGGAAGAAGAAGAAGCCACCACAAGTTTTCAGAGGAAAGGGAGCTAGAACTAAGACTTGGTCCACCTGGTGAAGAAAAAGAAGAAGAAGAAGATTGTTGGTCTCATCATCACAATGAAAACAAGAGAGAAAGAAACAGTCATGAATCAGATCAATCACCACTCTCTCTTGGTTACTTCTCAGCCCAGAGAATTTACAACTTCCAGCCTAAAGCTTCATCATTTCTTCAGAACATGTCAATGGTAGGAAAGGAATCAAAGGATGCAATATCATCACAACCATGTCGTTCTGAAGTGATGGAGTTTCATAATGGTGCAGTCTGTGCAGAGAAGAAAGCATTATCATCACCTTCTTCTGCAAATACAGCTGCCTCCAACAACAGCTCTCAGAAAAGAAGTGCAGCTGGTCCAGTCGTGGGTTGGCCACCAATTCGTTCATTCAGGAAGAACAATGCAAGTGGAAGCACTTCTAATTCTAAGCCTCCTCTTGGGTCCCACCACCACAACCAGCATAAGCATCATCATCATCATCTTAATCTTAATGTTGAAGACAAGGTTGCTAATACTACTAATAAGGAACATGTTAACAACATTAGTGGTAGTCCTAATAAAGGCATGTTTGTAAAAATCAATATGGATGGAATCCCAATTGGGAGAAAAGTGGATATCAATGCTTATGACAGCTATGACAAACTTTCCTCTGTTGTTGACCACCTCTTTAGAGACCTCCTTTCAGTTCAAAAACAAAAGCAAGAAGAGGAAGAGAAAACAATGATATTAGATGGAAGTGGGGAATATACTCTTATTTATGAAGATAATGATGGAGACAAGATGCTTGTTGGGGATGTCCCATGGCACATGTTTGCATCAACAGTGAAGCGATTGCGAGTGTTGAAGAAATCTGATCTTGCAGCTCTTTCACTTGGTGGTAAGCAAGGCCACATAAACCACTGA 975 0.4062 MMDESGRMGRRRSHHKFSEERELELRLGPPGEEKEEEEDCWSHHHNENKRERNSHESDQSPLSLGYFSAQRIYNFQPKASSFLQNMSMVGKESKDAISSQPCRSEVMEFHNGAVCAEKKALSSPSSANTAASNNSSQKRSAAGPVVGWPPIRSFRKNNASGSTSNSKPPLGSHHHNQHKHHHHHLNLNVEDKVANTTNKEHVNNISGSPNKGMFVKINMDGIPIGRKVDINAYDSYDKLSSVVDHLFRDLLSVQKQKQEEEEKTMILDGSGEYTLIYEDNDGDKMLVGDVPWHMFASTVKRLRVLKKSDLAALSLGGKQGHINH 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120988g00009 324 FunFam Auxin-responsive protein 208 318 - -
Stsc120988g00009 324 SUPERFAMILY CAD & PB1 domains 206 304 - -
Stsc120988g00009 324 MobiDBLite consensus disorder prediction 120 184 - -
Stsc120988g00009 324 Gene3D - 207 318 - -
Stsc120988g00009 324 MobiDBLite consensus disorder prediction 1 61 - -
Stsc120988g00009 324 ProSiteProfiles PB1 domain profile. 212 307 IPR000270 GO:0005515
Stsc120988g00009 324 MobiDBLite consensus disorder prediction 121 141 - -
Stsc120988g00009 324 MobiDBLite consensus disorder prediction 1 57 - -
Stsc120988g00009 324 Pfam AUX/IAA family 22 313 IPR033389 -
Stsc120988g00009 324 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 22 311 IPR003311 GO:0005634|GO:0006355
Stsc120988g00009 324 MobiDBLite consensus disorder prediction 155 171 - -
Stsc120988g00009 324 Coils Coil 243 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120988g00009 Stsc-Chr120988 44292 48279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120988g00009 215 318 B3 DNA Binding Superfamily AT4G23980 32.692 5.03e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc120988g00009 AUX_IAA 5.1e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120988g00009 K14484 - qsa:O6P43_018220 225.328