Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120988g00008 ATGGTTCTTGTACGGATACCCCATTTGAGGTTCCTTCTGCTTCTTCACATTCACTGCATCAGCTGCTACACCACCACCAGTACCACACCATTGAACTGTACGGACACAGGCCGTGTCTGCACCTCTTTCTTGGCCTTTAAGCCTCAACCGAACCAAACCTTAGCTGTGATTCAAAGCATGTTTGATGTGTTACCCGGTGACATCACTGTTGAGGATAGTGGTTGGGATTATGTGTTCATAAGGAAGAACTGTTCTTGTGCCTCTGGCCTCAGGAAGTATGTGTCTAACACCACTTATACTGTGAAATCCAATAGAGGGTATGTGTATGATTTGGTTATGGATGCTTATGATGGCCTTGCTTTGCCTCCAAACACAACAAGGAGGGCTAAGAATGGTGCTGTTGTGTCCTTGAGGTTGTTCTGTGGCTGCTCTAGTGGGTTGTGGAACTATCTGATGAGTTATGTTATGAGAGATGGTGACAGTGTTGAATCATTGGCAAGTAGATTTGGGGTTAGTATGGATAGCATTGAGAGTGTCAATGGAATTGGTAATCCTGATAATGTCACTGTTGGTTCTCTTTATTATATCCCTCTTGATTCGGTTCCGGGCGATCCTTATCCCATTAACAATACTCCTCCTCCAGCTCCTGTTCCTGCCCCATCTGTTGAGAATATCTCAGGTGATCAAGTGAGTCATAAGGCTCATGTACCCTATGGATGGATCATTGGGGGTTCAGGGGTTGGTCTTTTTATGAAGCAAACTGATGCTGAGTCCAGTCATCACACGATTACCGTTCCCAAAGTTTCAACTCTTGACCCTGATGTGTTTGACATGGATAAACCTGTAGTATTTACATATGAAGAGATTTTCTCCACAACTGATTGTTTCTCTGATTCAAATCTACTTGGTCATGGAACCTATGGTTCGGTTTACTATAGCCTTCTTCGTGATCAGGAAGTTGCTATCAAAAGAATGACCGCTACAAAAACAAAAGAATTCATGTCAGAGATGAAAGTTCTATGCAAGGTCCATCATGCTAATCTGGTAGAATTGATCGGCTATGCGGCTAGTCGGGATGAGCTTTTCCTTGTTTATGAGTATGCTCAGAAGGGTTCACTTAGAAGTCATTTGCATGATCCTCAAAATAAGGGTCATTCCCCACTTTCTTGGATCATGAGGGTCCAAATTGCTCTTGATGCCGCTCGGGGACTTGAATACATACATGAACACACTAAAACTCACTATGTCCACCGGGACATCAAGACGAGCAACATTTTGCTCGATGCTTCCTTTAGAGCAAAGATTTCAGATTTCGGGTTAGCAAAACTTGTTGGAAAAACAGATAATGGAGAAGTTTCAACAACCAAAGTTGTTGGTACATATGGATATCTTGCACCAGAATACTTGAGTGATGGACTTGCAACAACGAAAAGTGATGTCTATGCATTTGGTGTTGTCCTTTTCGAGATCATATCGGGGAGGGAGGCCATTATTCGAACGGAAGGGACGATGTCTAAAAATCCAGACAGGCGTTCACTGGCATCTGTAATGTTGGCAGTTCTTAGGAACTCGCCAGATTCCATGAGCATGTCAAGCATGAGAGATTATATTGACCCAAATATGATGGATCTGTATCCTCATGATTGTGTATTTAAGATGGCCATGCTGGCAAAGCAATGCGTGGACGACGACCCCGTGTTACGTCCCGACATGAAACAAGTTGTGATATCTCTGTCACAGATTCTCCTTTCTTCAATTGAATGGGAAGCAACTCTTGCTGGGAACAGCCAAGTATTTAGTGGCCTTGTTCAGGGAAGATAG 1821 0.4338 MVLVRIPHLRFLLLLHIHCISCYTTTSTTPLNCTDTGRVCTSFLAFKPQPNQTLAVIQSMFDVLPGDITVEDSGWDYVFIRKNCSCASGLRKYVSNTTYTVKSNRGYVYDLVMDAYDGLALPPNTTRRAKNGAVVSLRLFCGCSSGLWNYLMSYVMRDGDSVESLASRFGVSMDSIESVNGIGNPDNVTVGSLYYIPLDSVPGDPYPINNTPPPAPVPAPSVENISGDQVSHKAHVPYGWIIGGSGVGLFMKQTDAESSHHTITVPKVSTLDPDVFDMDKPVVFTYEEIFSTTDCFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMSEMKVLCKVHHANLVELIGYAASRDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKTDNGEVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGREAIIRTEGTMSKNPDRRSLASVMLAVLRNSPDSMSMSSMRDYIDPNMMDLYPHDCVFKMAMLAKQCVDDDPVLRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120988g00008 606 Pfam LysM domain 154 191 IPR018392 -
Stsc120988g00008 606 Gene3D LysM domain 149 202 IPR036779 -
Stsc120988g00008 606 Gene3D Transferase(Phosphotransferase) domain 1 369 592 - -
Stsc120988g00008 606 SUPERFAMILY Protein kinase-like (PK-like) 275 578 IPR011009 -
Stsc120988g00008 606 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 21 600 IPR044812 GO:0019199|GO:0045087
Stsc120988g00008 606 FunFam PTI1-like tyrosine-protein kinase 3 368 592 - -
Stsc120988g00008 606 ProSitePatterns Protein kinases ATP-binding region signature. 302 323 IPR017441 GO:0005524
Stsc120988g00008 606 SMART LysM_2 153 197 IPR018392 -
Stsc120988g00008 606 FunFam Kinase family protein 271 367 - -
Stsc120988g00008 606 SUPERFAMILY LysM domain 152 197 IPR036779 -
Stsc120988g00008 606 Pfam Protein tyrosine and serine/threonine kinase 300 576 IPR001245 GO:0004672|GO:0006468
Stsc120988g00008 606 SMART serkin_6 296 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120988g00008 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Stsc120988g00008 606 ProSiteProfiles Protein kinase domain profile. 296 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120988g00008 606 ProSiteProfiles LysM domain profile. 152 196 IPR018392 -
Stsc120988g00008 606 Gene3D Phosphorylase Kinase; domain 1 268 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120988g00008 Stsc-Chr120988 33732 37591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120988g00008 30 606 Receptor kinase-like Gene Family AT1G51940 66.981 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc120988g00008 PK_Tyr_Ser-Thr 6.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120988g00008 - - gmx:100796989 962.214