Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120988g00002 ATGATGATGATGATGAATCATAGAAGGTGCTCTGGGTGCAGCAAAACTGGCCATAATTCTAGAACATGTCCTTATTACTCCTCTGCTTCTCGGACCACCGTTAATACTGTGAAGCTCTTCGGGGTCAGGCTGCCTATGACCGTCGGATCAGGATCAGCAGCGTCTTTATCATGCTCCGTCGCAACACCCAATCATAGCTCTCCTTCCTCCTCTGACGGTTATTATGTGTCGGATAATGAGCCATCAACCCCTGCCGCCAAAATCAACCGCCACCACCCTCCTCCTATAAACAAAGGTATTCCATGGAACGAAGAAGAACATAGATTGTTCTTACTTGGCCTGGAGAAATTGGGAAAAGGAGATTGGCGTGGAATATCGAAAAATTTCGTTCGGTCAAGAACTCCAACTCAAGTAGCAAGCCATGCTCAGAAGTACTTTCTCCGGCATCAGCAACGGCAGAGCAATGCGCCACGGCGAAAACGACGATCAAGCCTTTTTGACATGTTTCCAAATATGGCTTCAAATTCGCCTTCACTATTGAAAGAAGAGCAAGTATTACTTGGGGCTTCTGAGACCTCAGAGCTTAGTAATGTAGAATCAGTGCGTTCATTATACCTCTCTCTCAATTCAGAATTTGAACCAATGGAAGCTACATTAGAAGAAGAGCTTAGTGAAACTATAATGGGATCCAGCAGAGGGACACCGGCATCGCCGCTGCCTGGATTGTTCCGGCCGCCTTATCCAACTCTTCCATTTTCCTTATGGCCATCATCAAGTGCATATTCCTTTAGAGAAGATACCCTAATTTTAGAGGGAAGGCCATTACATTAG 831 0.4573 MMMMMNHRRCSGCSKTGHNSRTCPYYSSASRTTVNTVKLFGVRLPMTVGSGSAASLSCSVATPNHSSPSSSDGYYVSDNEPSTPAAKINRHHPPPINKGIPWNEEEHRLFLLGLEKLGKGDWRGISKNFVRSRTPTQVASHAQKYFLRHQQRQSNAPRRKRRSSLFDMFPNMASNSPSLLKEEQVLLGASETSELSNVESVRSLYLSLNSEFEPMEATLEEELSETIMGSSRGTPASPLPGLFRPPYPTLPFSLWPSSSAYSFREDTLILEGRPLH 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120988g00002 276 ProSiteProfiles Zinc finger CCHC-type profile. 8 24 IPR001878 GO:0003676|GO:0008270
Stsc120988g00002 276 MobiDBLite consensus disorder prediction 55 97 - -
Stsc120988g00002 276 CDD SANT 101 146 IPR001005 -
Stsc120988g00002 276 SMART sant 98 148 IPR001005 -
Stsc120988g00002 276 Pfam Myb-like DNA-binding domain 101 146 IPR001005 -
Stsc120988g00002 276 Gene3D - 100 151 - -
Stsc120988g00002 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 150 IPR017930 -
Stsc120988g00002 276 MobiDBLite consensus disorder prediction 55 84 - -
Stsc120988g00002 276 FunFam transcription factor MYB1R1 100 151 - -
Stsc120988g00002 276 ProSiteProfiles Myb-like domain profile. 101 146 IPR001005 -
Stsc120988g00002 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 97 148 IPR006447 GO:0003677
Stsc120988g00002 276 PANTHER TRANSCRIPTION FACTOR KUA1 4 192 - -
Stsc120988g00002 276 SUPERFAMILY Homeodomain-like 97 150 IPR009057 -
Stsc120988g00002 276 ProSiteProfiles SANT domain profile. 102 150 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120988g00002 Stsc-Chr120988 7405 9038 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc120988g00002 Myb_DNA-binding 6.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120988g00002 - - aip:107617323 354.755