Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120986g00007 ATGAAGGACCGGCAACGTTGGAGAGCTGAAGAAGATGCTTTGTTACGTGCTTATGTCAAACAGTATGGTCCAAGAGAATGGAATCTTGTGTCTCAGCGCATGAACACACCACTTAACAGGGATGCAAAGTCTTGCTTAGAAAGGTGGAAGAATTACCTTAAGCCAGGCATCAAGAAAGGATCTCTCACCGAAGAAGAGCAGCATCTCGTCATCCGTCTCCAGGCCAAATACGGCAACAAATGGAAGAAGATCGCGGCCGAAGTCCCCGGTCGGACAGCTAAGAGATTAGGCAAGTGGTGGGAGGTGTTCAAGGAGAAGCAACTTAGACAGAAGAAGGAGATTACCAGAATCGCCGAACCGATTAACGATAGCAAGTACGAGCACATTCTAGAGAGTTTCGCCGAGAAGCTAGTTAAGGACAGTCCTTCGCCTTCTTTTATTATGGCTTCTTCCAACGGGCCGTTTCTTCACGCCGACGCGCCGGCCCCTGCATCTTCCCCTGTGCTTCCTTCCTGGCTTTCCAATTCTCATAGTGCTACAACCGGCCCTCCGAATTCCCCCTCCGTGACGCTAAGCCTTTCGTCGCCAACCGTGGCAGCACCACCATTTCCTTGGATGCAACCCGAGAGAGCACCAGATAATGCTCCTTTTGCTTTAGGCAATGTACCTACTCTTTGTGGGCCTTTTCCGGCTTCGGGCGAAAACATGGTGATATCTGAGCTGGTGGAGTGCTGTAAAGAGCTGGAAGAAACACATCATGCTCTGGCCGCACATAAGAAAGAGGCGGCCTGGAGGTTAAGGAGGGTGGAGCTGCAGCTGGAATCGGAGAAAGCTACCCGAAGGAGGGAGAAGATGGAGGAAATTGAAGCAAAGATTAAGGCCCTTGAGGAAGAGCAGAAGGCTGCTTTAGGTAGGATTGAAGCTGAGTACAGGGAACAGCTGGCCGGGTTAAGGAGGGATGCCGAGACGAAGGAGCAGAAGCTCGCCGAGCAGTGGGCCGCGAAACACTTGCGGCTCACTCGGTTTCTGGAGCAAGCAGGATGCAAAATGGGGCTCCCTGAGCAGCATGGAAGATGA 1077 0.52 MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQHLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQLRQKKEITRIAEPINDSKYEHILESFAEKLVKDSPSPSFIMASSNGPFLHADAPAPASSPVLPSWLSNSHSATTGPPNSPSVTLSLSSPTVAAPPFPWMQPERAPDNAPFALGNVPTLCGPFPASGENMVISELVECCKELEETHHALAAHKKEAAWRLRRVELQLESEKATRRREKMEEIEAKIKALEEEQKAALGRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHLRLTRFLEQAGCKMGLPEQHGR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120986g00007 358 Gene3D - 62 124 - -
Stsc120986g00007 358 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Stsc120986g00007 358 FunFam MYB-related transcription factor 4 58 - -
Stsc120986g00007 358 Pfam Myb-like DNA-binding domain 7 68 - -
Stsc120986g00007 358 Gene3D - 4 58 - -
Stsc120986g00007 358 Coils Coil 266 327 - -
Stsc120986g00007 358 CDD SANT 6 53 IPR001005 -
Stsc120986g00007 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Stsc120986g00007 358 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Stsc120986g00007 358 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Stsc120986g00007 358 CDD SANT 63 104 IPR001005 -
Stsc120986g00007 358 SMART sant 58 106 IPR001005 -
Stsc120986g00007 358 SMART sant 3 55 IPR001005 -
Stsc120986g00007 358 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 354 - -
Stsc120986g00007 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120986g00007 Stsc-Chr120986 51993 54986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120986g00007 1 353 MYB Transcription Factor Family AT2G37630 64.690 8.31e-157 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc120986g00007 Myb_DNA-bind_6 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120986g00007 K09422 - gmx:100101908 508.449