Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120986g00004 ATGGGTGCTTGTTGGAGCAATAGGATTAAGGCTGTGAGTCCTTCCAATACAGGGTTCACGTCGCGAAGTGCGAGCAGAGATGGTTATGATATCAGCTCGAATAGTAGGAGCTCATCAGCCTCCATTCCCATGACACCCCGGACCGAGGGTGAGATCTTACAATCTTCCAATTTGAAAAGCTTCAGCTACGCCGAGCTAAAAACCGCCACGAGAAACTTCCGGTCGGACAGCGTCTTAGGGGAAGGTGGATTCGGTTCGGTTTTTAAGGGGTGGATTGATGAGCATTTACTTCCTACCACAAGGCCAGGAACTGGTGTGGTTATTGCTGTGAAGAGACTCAACCAAGAAGGTTTCCAAGGTCACAAGGAATGGTTGGCTGAAATCAACTATCTCGGACAACTGCAGCATCCTAATCTAGTCAAATTGATTGGCTACTGCTTAGAGGACGATCACCGTCTTCTAGTCTACGAATTCATGCCTAAGGGAAGCGTGGAGAACCATCTTTTTAGGAGGAGTGTTCATTTTCAGCCGCTTTCATGGACTTTGCGATTAAAAATAGCCCTCGGTGCTGCAAAGGGTCTTGCGTTTCTTCACAGCACGGAAACTAAAGTCATATACCGAGACTTCAAGACTTCGAATATCTTGCTTGATACTAACTACAATGCCAAACTTTCCGATTTTGGGCTGGCCAGAGATGGACCGACGGGTGATAAGAGCCATGTCTCGACTAGGGTCATGGGAACCCATGGATATGCCGCACCAGAGTATCTTGCAACAGGTCATCTCACTTCCAAGAGTGATGTATATAGTTTCGGAGTTGTTCTTTTGGAGATGTTATCTGGAAGGCGCGCCATAGACAAGAACCGGCCATCCGGAGAACACAACCTAGTCGAATGGGCGAAACCTTACCTTTCCAACAAGCGTAGAGTTTTTCGTGTAATGGATACCCGTCTCGAAGGTCAATACTCGGTTAGTAGAGCTCAAAAGGCCGCCACACTCGCTTTTCAGTGTCTTGCCATGGATCCTAAGTATAGGCCAAATATGGATGATGTAGTTAGAGAATTGGAGCAGCTCCAGGAACCGAAGGACATGTCGAAAAATGGCAATCCGAAGGAGCATCGAGTTCGTAGGTCCGGCCTTAGCCTCCCTACATCTAGCAAAGGTATTGCAGATTCTCCAAAAAGGAGTGCTTATCCCAGACCTTCTGCTTCCTCACTTTATGCCTAA 1227 0.4743 MGACWSNRIKAVSPSNTGFTSRSASRDGYDISSNSRSSSASIPMTPRTEGEILQSSNLKSFSYAELKTATRNFRSDSVLGEGGFGSVFKGWIDEHLLPTTRPGTGVVIAVKRLNQEGFQGHKEWLAEINYLGQLQHPNLVKLIGYCLEDDHRLLVYEFMPKGSVENHLFRRSVHFQPLSWTLRLKIALGAAKGLAFLHSTETKVIYRDFKTSNILLDTNYNAKLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTSKSDVYSFGVVLLEMLSGRRAIDKNRPSGEHNLVEWAKPYLSNKRRVFRVMDTRLEGQYSVSRAQKAATLAFQCLAMDPKYRPNMDDVVRELEQLQEPKDMSKNGNPKEHRVRRSGLSLPTSSKGIADSPKRSAYPRPSASSLYA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120986g00004 408 SUPERFAMILY Protein kinase-like (PK-like) 52 358 IPR011009 -
Stsc120986g00004 408 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Stsc120986g00004 408 PANTHER OS01G0588500 PROTEIN-RELATED 37 359 - -
Stsc120986g00004 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Stsc120986g00004 408 FunFam Serine/threonine-protein kinase BIK1 40 158 - -
Stsc120986g00004 408 Pfam Protein kinase domain 74 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120986g00004 408 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Stsc120986g00004 408 MobiDBLite consensus disorder prediction 14 49 - -
Stsc120986g00004 408 MobiDBLite consensus disorder prediction 358 408 - -
Stsc120986g00004 408 Gene3D Transferase(Phosphotransferase) domain 1 159 379 - -
Stsc120986g00004 408 MobiDBLite consensus disorder prediction 358 378 - -
Stsc120986g00004 408 CDD STKc_IRAK 79 358 - -
Stsc120986g00004 408 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120986g00004 408 FunFam Probable serine/threonine-protein kinase PBL8 159 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120986g00004 Stsc-Chr120986 28258 31324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120986g00004 36 355 Glycoside Hydrolase AT3G07070 48.338 2.21e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc120986g00004 Pkinase 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120986g00004 - - gmx:100795058 677.167