Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120985g00004 ATGGAGTCTGGTGGAAGGCTTTTCTTTGACCCATCTGCTAGTAGGGGGAACAATAACAACATGCTCTTCCTTGGCACTACTGCTGATCTTGCTTTTCGGGGAAGGTCGATCCTGAGCATGGATGAATGCTCAAAGAGGCGGCCTTTCTTCAGCTCACCAGATGAGCTGTTTGATGATGAGTACTATGAGGAGCAGCTGCCGGAGAAGAAGCGCCGCCTCACTTCCGAACAGGTCAATCTGTTGGAGAAAAGCTTCGAGGAAGAGAACAAGCTGGAGCCGGAGAGGAAGACCCAGCTGGCAAAGAAGCTGGGGTTGCAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGCAGGGCTCGATGGAAGACCAAGCAACTCGAAAGGGATTATGATGTTCTCAAGGCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTGTGAAGGAGAATGAAAAGCTCAAATCTGAGGTGGTATCCTTAAATGAAAAGCTTCAAGCGCAAGCTAAAGAGATGCCAGGGGAGCCCATGTCGGACAACAAAGCCGACCCAGTTCCGGTTGACATAGGTCAAATCATCAGCATGAAGGTTGAGGATCGGCTGAGCATCGGGAGTGTAGGAAGTGCCGTGGTTGATGAGGGCAGTAGTCCACAGCTTGTTGTCGAGAGCGTTGATTCATACTTTCCTGCTGAGAACTACGGTGGCAGTTGCATGGCCCCAATTGAGAGGGTTCAGTCAGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTATCTTCTCAGATGTGTTTGTTGCGGCTGAAGCTGAGCAACAGAACCAAGAAGAAGGGGAGGTATTGCGTTGGTGGGGTAATATTATGTTGAATAATGCAGCAGTGCTTTTCTAA 885 0.4983 MESGGRLFFDPSASRGNNNNMLFLGTTADLAFRGRSILSMDECSKRRPFFSSPDELFDDEYYEEQLPEKKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSTYDSIVKENEKLKSEVVSLNEKLQAQAKEMPGEPMSDNKADPVPVDIGQIISMKVEDRLSIGSVGSAVVDEGSSPQLVVESVDSYFPAENYGGSCMAPIERVQSEEEDGSDDGRSIFSDVFVAAEAEQQNQEEGEVLRWWGNIMLNNAAVLF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120985g00004 294 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Stsc120985g00004 294 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Stsc120985g00004 294 SMART HOX_1 67 128 IPR001356 GO:0003677
Stsc120985g00004 294 Pfam Homeobox associated leucine zipper 124 166 IPR003106 GO:0006355|GO:0043565
Stsc120985g00004 294 FunFam Homeobox-leucine zipper protein HAT5 62 126 - -
Stsc120985g00004 294 Coils Coil 144 171 - -
Stsc120985g00004 294 SUPERFAMILY Homeodomain-like 62 126 IPR009057 -
Stsc120985g00004 294 Gene3D - 62 131 - -
Stsc120985g00004 294 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Stsc120985g00004 294 CDD homeodomain 69 125 IPR001356 GO:0003677
Stsc120985g00004 294 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Stsc120985g00004 294 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Stsc120985g00004 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 61 216 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120985g00004 Stsc-Chr120985 48198 51605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120985g00004 1 283 Homeobox Transcription Factor Family AT3G01470 59.028 7.30e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc120985g00004 Homeodomain 6.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120985g00004 K09338 - gmx:100797836 416.387