Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120985g00003 ATGGAGCTCACCGATTCCGGTTCCGCCGGCGACCGCACCACCGCTCCACAGCCTCAAGACTCTCGCTCCTCCGGTCTCGGAATTGACCTCAACGAGATCCCTTACGCCGCTGCTTCACCTTCCTCCAACCTTGCCGAAACCCTACCGCCGCCTCCGGACTCCGCAGTTGATATCGTCCGCGCCTACCATGAAAACCCCGTGCCGCCACCGGGAGCTCCAGCCGCACTTCCCCGCGGCCCTGCTCCCTGTGCCACATGCTCTAAGCCGCCTGGCGCCGCCGGTGTTGTTATCTGCGACGGCTGTGAGCGTCTCTTCCACACAGCATGTGCTGGGTTTCGCGGTACTCGCCAGGCGTCGATCCTTGATGAGTGGCTCTGCAGCGAGTGTGTCGCTGGTGGAGTGAGGAGCAAGAGGTGGCCGCTCGGCGTCAAGTCCAAGCAGCTTCTGGATATCAATGCCTCGCCGCCCAGTGATGCTGATGGCGAAGGTGCCAGTGAGGAGTTACAGGATTCCAGAAAGCACACTCTGGGTGATAATTCTTTTGGTGCCAATCCATTTGGTGCCCCAATAACATGTTCAAACTACTACAATGGGAACACTTTTGGCTTCCAAAAGGCATCGGGAGTTGTAACACATGCTGTTAGAGTGGGTTTTGAGGATATGCTGAATCATACCCAATCAATGACTAGATGCTTTGAGGAGGCTCTTAGGGACTTTATATCTGAAAGGCGTGGTGTGCTAGAGGAAGGTTGGCGAGTGGAATTTAGGCAATCCATGAACAGCTCTGAACTGTATGCAGTTTACTGTGCTCCTGATGGGAAAATTTTTGATTCTGTGTATGAAGTAGCTTGTTATCTGGGGCTAACATCTGGCTACAACTCTATGGAATCCGAAGTTAGAAATGATAGGTCTGTTGCTTCATCAGGTGGAACTCATTTATCCAGAAAAAGAAAGTCAACTAGGAATCTATCCAATGGTTTTGCAGAAAAATTGGGAACCCATATCAATAGTTACTGTAAGGATTCTCTGTCTGATGCTTTAACTGTGGAATGTTCTGGTGATCATGGGCATATCCACAAAGCTTCAGAAATTGCAAGAAAAGAGGATTGTCATTCTGGTCTTCTGCAATCTTCTGACGGACTTCCTCTACAGTTCGGGGACTTCTTTGTTCTTTCATTGGGAAAAGTTGATGATAGACCTACATATTATGATGTTCATCTTATATGTCCCATAGGCTATAAATCTTGTTGGCATGATAAGATTACTGGTTCTCTTTTTACATGTGAAGTTTTAGAGGGTGGTGATTCTGGACCTATATTCAGGATAAAAAGGAGTTCTTGTTCCAGGTTTCCTGTTCCAGTTGGGTCAACCATCCTATCAATGTCAAGTCTTTGTCAAATTTTAAATAAAAAAAATGAAGGTGAGAGAAAGAGTGATGATAGCATGGATTATGATGTTCGTGAAAATATCCAGATGATTCTTTCAGATTCTTGTGCGCCAACTGAAAATGATGTCATTAATTGTATTGCAAGTTTCTCAAATGAAACATGTGCTGGAGATTCATCATCCCAAGACTTAGGATTGATTGATGGAATTGGTGAAATTTGGGTGGAAGAGCGGTCATCATCCGCAGCTTGGAGAGTTATGTCTCAAAAGGTAGTAAATGCTTGCAATGATATCTGCAAGCAGAAGGGAAGCCTTACGTTCTATTGTAAACATATTGGAGATGAACCATGCTTACACAAATGGGACACCAGTAGTAAAAAAAGGGATGAACACTTCTCTTTGTTGGATAAATTTAGTGTTTCAGTAGGTTCAGTTAGCGTCCCAGATGTAACTTATGCAGACAATGATCTGAAAGGTCTCTGTGAGGGTTTAGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTAGAATTTATGCAAGAATTATTGGAACAGCTTCCAGGTGTTAAGGAGTCTCTGAAATATGAACCTCTAAGCAGTCGCAGTAATAGCTCATCACTGCCAACAGTTGAGAATGGTTTCCTAGTTGTTGAATGGAGAGGTGGATCACAATATCATGATGAAAATGAAGCAGTTCAAGGTTTGTACAAGAGGCCCAAAAAAGCGAGATTGACTGAAACGTATGTAAGGGAAGATCGATGTCCACCTCCTGGGAAGTCGTTATGTTCTAGAGTTCCTAATGAACTTATTGGTGACATTCTTCAGGTTTGGGAGCTTTTAGATCGATTTGATGAAATTCTGGACTTGAAAGAACTGTTGTCCCTAGATGAGCTAGAGAAGGAACTTATCAACCCATGGTTTGATGAATTGGATTTGAATGAGAAATTTGAGAAGGATATAGATGCCACTCAGGTTTTGAGTGGGCGAGGCACTGATGGTGATTGTACACTGTCCTCAAGTTGTGAAGCTGGTCCATCACGACATATAGAAAGTTCCCATGCCTTTATTCAAATGGAAACAGAAGCAATGAAAGAGGCAGCCCAAGTTAAGCTTGCATCTTTCACTTATGCTCGATGCTTTGGTGTAGCCTTGACAAAGGCCCATAATTCATTGCTAAGAGTGCTAATTGGTGAACTTCAATCAAAGGTGGCTGCCCTGGTGGATCCAAATTTTGAACCTGGAGAGACTAAAACAAGACGCGGAAGAAGGAAAGATATAGACAGTGCTATTCCTGCTAAACGTACAAAGCTCAATATGCTTCCTATTAATGAATTAACATGGCCAGAATTAGCTCGTCGATACATCCTGGCAGTCTTATCAATGGATGGGAACCTTGACTCTGCAGAAATTACTGCTCGTGAAAGTGGTAAAGTGTTTCGCTGCTTACAAGGTGATGGTGGCTTGCTTTGTGGTTCCCTTTCAGGTGTGGCTGGGATGGAGGCAGATGCACTGTTGCTTGCTGAGGCTACTAGGAAAATATTTGGTTCTTTGAGCAGAGAAAATGATGTGCTAACCATGGAAGATGATGAGTCTGATGCAAATGACCCTCCTGAAAAAAAATTGGGCAGTGATGGTGCTCTGCCTGAATGGGCACAGATGCTAGAACCTGTCAGAAAGTTGCCAACAAATGTCGGAACCCGAATCAGAAAGTGCGTCTATGATGCTCTGGAAAAGAATCCGCCCGAGTGGGCTAGAGAAATACTGGAGCGTTCGATTAGCAAGGAAGTGTACAAGGGCAATGCATCTGGACCAACGAAGAAAGCAGTTCTTTCAGTGTTAAGTGATCCGTTTCGGGGAGGAGTGCAGCAGAACCCTAAGAAAGGAAGGAAGAAAAAGATTGTTTTGTCAATTTCTGACATTATCATGAAACAATGCCGCATTGTATTACGCCGTGCAGCTGCTGCTGACGATTCAAAGGTTTTCTGCAATTTGCTGGGTAGAAAGTTAATCAATTCTTCTGATAATGATGATGAGGGGCTTCTAGGATCTCCAGCTATGGTGGCTCGTCCTCTTGACTTCCGCACTATTGACCTAAGGTTGGCTGCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCATGAGCTTTGGAGCAATGTTCGTGTTGCTTTTGGAGATCAACCTGATTTAGTTGAACTGGCTGAAAAATTATCCCAGAATTTTGAATCATTGTATGAAGAGGAGGTTGTCACCTATTTTGAAAAATTTGTGGAGTATTCTAAGCTGGGATGCTTGAATGCAGAAATGAGAAAAGAAGTTGAAGATTTTATTGCTTCAACAAATGAGATTCCCAAAGCTCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGACAGTGTCTTACTATGTGATACTTGTGATGCCGAGTATCATACATATTGCCTGAATCCTCCGCTTGCAAGGATCCCTGAAGGAAACTGGTACTGCCCTTCTTGTGTTGATGGTAAACATGCCACTCAAGATGCTACAAATCATGCACAGATTATTGGCAAACGTCGAAGTAAGAAGTTCCAGGGAGAAGTTCATGCTCTTTACTTGGATGCGCTAACTCATTTATCTGCTATAATGGAAGAAAAAGAATACTGGGAGTACAGCGTGGGCGAGAGAACTTTCCTTCTTAAGTTTTTGTGTGATGAGTTACTTAACTCTTCGCTGATACGCCAGCACCTTGAGCAATGTGCGGATTTATCTGCTGAGTTACACCAAAAATTGCGTTCTCTCTCTGCAGAATGGAAAAACCTGAAAACTAAAGAAGATATCTTATCCTCAAAAGCTGCAAAAGTTGTTACATGCATGCCAAATACCACTGGAGAAGTTGGTTCTAAGGAAGGGCTCACAGCTGTGCTCTCAAGTACTGGTAAATGTCTGGGGCAACCACACAATGTAATTGACAGTCCTAATAATTTTGGAGCATCTGTTGATAGTTTACAGTCAGAAGAGGTTACTAAAGAGAAGTATAGGCTCAATGGCATTGACAAAAGTGTATCTCTGACAAATTCAGATTCTGAAAACCAACACTTGAATTCCATAGATGTAGAGGGACAACATAGGAATGTCTCTGCAGCAGTGGCTTCCCAGTGTACAGAAAAATCCACAAAATCTTTTCTTTCTTCAAGTCATTTGCCTCATGAGCAAAATGGCACTAGTGGAGCAGCTCATATCCAGGTTAATCACCAGAAATCTGATGTGAATGACGTATCTACTCCTGTTGATGAGTCAGAACCCTATCACCTTGAGCTCAATGCCATCAAGAGTGATATTTCAAGATTAGAAGACTCCATTGCTGATGTCGGATCAAAGCTGCTGAAGCTCTCCATTCGTCGAGAATTTTTGGGAATTGACTCCATTGGTCGCCTGTATTATGCTTCAGCTGTACGAAGAGGTCGTTTAGTCGTTGATGCAAGTGCTGCAGTACTGCATGGAAGACAAATGACAGTTTGCAGTGATTCTGTGGACAGGTTCTCTTCTCTCCAGCATTATGTACTATCCGACAAGGATAAGATCTTAGGGTTGCAGAAGGACTCCCCTTGTTTAATGTCACAACCAAGTGATTGTTCAGGCATTAGTTCTTCATGGGTTGCTTATGAAACTGATGCAGAAATTGAAGAGCTTTTACGCTGGCTGAAGGACAATGAACCTAAAGAAAAAGAACTGAAAGATTCTATTATGATGTGGCCAAAATCAAGAGCTCAGGAGTTTCTTAATTCACCGACTGAAGGTCAGGTTGAGGAACGAGGGCCTTCTCCTACACCAAGAAATAAGGAGAACGCAATATCTAATTCTCTGGTTACAAAGGCAACATCTTTGCTGGAAAAGAACTATGGTCCCTTCTTTGAGTGGGATGCCACTGACATGACAAAGAAGCGCAGTAAAAAGGCCAGAACAAATAATGATGAGAAGTTGTATAGGTGTCTTCCTGCCTTGGAGAAGAATAGGGATGGTGTATCTTCTAAAGGAAGAGGGAACACGAAATGCGATACCTCAAGTGAAATATTCAGAGGTGATGCAGATACAGCTGGAACTGCAGCTGCATCTAATGTTTCTTCTAAGCTTAGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCTCCTGCCCATTTAACTTCGAAGATATATGTTCCAAGTTTGTGACAAATGATTCCTCCAAGGATCTTGTCAGAGAAATTGGTCTTATTGGTTCAAATGGGATCCCATCCTTTGTTCCTTCCATATCTCCCTTTGTTAATGATTCTACACTCGTGCTATTCTCAGCTCAAAAGGATAATAGTACTGGTGGTGGTGCATCAATAACTTCAGGATGTCAGGTTTCTCAGGGATGCACTGATGGAACTAGCAAATGGCATGATAAAAAGTCTGGAACATCTTTAGCTTCAAATGAAATTAGTAAAGCAGGAATTTCTGATAAAATATCTTTGGAACAAAGAGATGCAAATTGTTCTGAACGAAATCCTGTTTCAGATATAGGGGTAGGTGGCTGCTGTGTGGTCCCATTGTCTTCTTTGAGACCATTAGTTGGCAAAGTTTCACATATTTTGAGGCAACTGAAGATCAGTTTACTGGATATGGATGCTGCTCTCCCAAAAGTTGCTTTGAGACTATCTAAGGCACAGTCAGACAGAAGGCAGGCATGGCGGGCATTTGTTAAATCTGCAGAGACAATATATCAGATGGTTCAGGCAACAATTTCACTTGAGGATATGATTAAAACAGAGTACTTAAGAAATGACTGGTGGTATTGGTCATCATTCTCTGCTGCTGTCAAATCGTCTACCTTGCCTTCCCTTGCCCTTCGTATATATTCTCTTGATTCAGCTATTATATATGAGAAAATGCCCAATTCAACTTGTGACAGCTCGGAACCTTCTGCTACAGCAGAACAAAAACCACTGACCAATGCTGATACAGAGAAATTGAAAGCAAGTCGGAAGTCAAGTAGGAAAAGGAAGGAACCAGATGGTTGA 6435 0.4289 MELTDSGSAGDRTTAPQPQDSRSSGLGIDLNEIPYAAASPSSNLAETLPPPPDSAVDIVRAYHENPVPPPGAPAALPRGPAPCATCSKPPGAAGVVICDGCERLFHTACAGFRGTRQASILDEWLCSECVAGGVRSKRWPLGVKSKQLLDINASPPSDADGEGASEELQDSRKHTLGDNSFGANPFGAPITCSNYYNGNTFGFQKASGVVTHAVRVGFEDMLNHTQSMTRCFEEALRDFISERRGVLEEGWRVEFRQSMNSSELYAVYCAPDGKIFDSVYEVACYLGLTSGYNSMESEVRNDRSVASSGGTHLSRKRKSTRNLSNGFAEKLGTHINSYCKDSLSDALTVECSGDHGHIHKASEIARKEDCHSGLLQSSDGLPLQFGDFFVLSLGKVDDRPTYYDVHLICPIGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIKRSSCSRFPVPVGSTILSMSSLCQILNKKNEGERKSDDSMDYDVRENIQMILSDSCAPTENDVINCIASFSNETCAGDSSSQDLGLIDGIGEIWVEERSSSAAWRVMSQKVVNACNDICKQKGSLTFYCKHIGDEPCLHKWDTSSKKRDEHFSLLDKFSVSVGSVSVPDVTYADNDLKGLCEGLGKWLEQDRFGLDVEFMQELLEQLPGVKESLKYEPLSSRSNSSSLPTVENGFLVVEWRGGSQYHDENEAVQGLYKRPKKARLTETYVREDRCPPPGKSLCSRVPNELIGDILQVWELLDRFDEILDLKELLSLDELEKELINPWFDELDLNEKFEKDIDATQVLSGRGTDGDCTLSSSCEAGPSRHIESSHAFIQMETEAMKEAAQVKLASFTYARCFGVALTKAHNSLLRVLIGELQSKVAALVDPNFEPGETKTRRGRRKDIDSAIPAKRTKLNMLPINELTWPELARRYILAVLSMDGNLDSAEITARESGKVFRCLQGDGGLLCGSLSGVAGMEADALLLAEATRKIFGSLSRENDVLTMEDDESDANDPPEKKLGSDGALPEWAQMLEPVRKLPTNVGTRIRKCVYDALEKNPPEWAREILERSISKEVYKGNASGPTKKAVLSVLSDPFRGGVQQNPKKGRKKKIVLSISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYGGSHEAFLEDVHELWSNVRVAFGDQPDLVELAEKLSQNFESLYEEEVVTYFEKFVEYSKLGCLNAEMRKEVEDFIASTNEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDATNHAQIIGKRRSKKFQGEVHALYLDALTHLSAIMEEKEYWEYSVGERTFLLKFLCDELLNSSLIRQHLEQCADLSAELHQKLRSLSAEWKNLKTKEDILSSKAAKVVTCMPNTTGEVGSKEGLTAVLSSTGKCLGQPHNVIDSPNNFGASVDSLQSEEVTKEKYRLNGIDKSVSLTNSDSENQHLNSIDVEGQHRNVSAAVASQCTEKSTKSFLSSSHLPHEQNGTSGAAHIQVNHQKSDVNDVSTPVDESEPYHLELNAIKSDISRLEDSIADVGSKLLKLSIRREFLGIDSIGRLYYASAVRRGRLVVDASAAVLHGRQMTVCSDSVDRFSSLQHYVLSDKDKILGLQKDSPCLMSQPSDCSGISSSWVAYETDAEIEELLRWLKDNEPKEKELKDSIMMWPKSRAQEFLNSPTEGQVEERGPSPTPRNKENAISNSLVTKATSLLEKNYGPFFEWDATDMTKKRSKKARTNNDEKLYRCLPALEKNRDGVSSKGRGNTKCDTSSEIFRGDADTAGTAAASNVSSKLSSRLIKFSNEESSCPFNFEDICSKFVTNDSSKDLVREIGLIGSNGIPSFVPSISPFVNDSTLVLFSAQKDNSTGGGASITSGCQVSQGCTDGTSKWHDKKSGTSLASNEISKAGISDKISLEQRDANCSERNPVSDIGVGGCCVVPLSSLRPLVGKVSHILRQLKISLLDMDAALPKVALRLSKAQSDRRQAWRAFVKSAETIYQMVQATISLEDMIKTEYLRNDWWYWSSFSAAVKSSTLPSLALRIYSLDSAIIYEKMPNSTCDSSEPSATAEQKPLTNADTEKLKASRKSSRKRKEPDG 2144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120985g00003 2144 MobiDBLite consensus disorder prediction 1723 1747 - -
Stsc120985g00003 2144 MobiDBLite consensus disorder prediction 301 321 - -
Stsc120985g00003 2144 Pfam Methyl-CpG binding domain 238 291 IPR001739 GO:0003677
Stsc120985g00003 2144 ProSitePatterns Zinc finger PHD-type signature. 83 129 IPR019786 -
Stsc120985g00003 2144 Gene3D - 1100 1221 IPR036427 GO:0005515
Stsc120985g00003 2144 CDD Bromodomain 1094 1211 - -
Stsc120985g00003 2144 SMART PHD_3 1258 1304 IPR001965 -
Stsc120985g00003 2144 SMART PHD_3 82 130 IPR001965 -
Stsc120985g00003 2144 ProSiteProfiles Zinc finger PHD-type profile. 80 132 IPR019787 -
Stsc120985g00003 2144 SUPERFAMILY FYVE/PHD zinc finger 1245 1308 IPR011011 -
Stsc120985g00003 2144 SUPERFAMILY FYVE/PHD zinc finger 51 130 IPR011011 -
Stsc120985g00003 2144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1244 1327 IPR013083 -
Stsc120985g00003 2144 MobiDBLite consensus disorder prediction 988 1007 - -
Stsc120985g00003 2144 Pfam Bromodomain 1147 1202 IPR001487 GO:0005515
Stsc120985g00003 2144 MobiDBLite consensus disorder prediction 2104 2144 - -
Stsc120985g00003 2144 Pfam PHD-finger 1258 1304 IPR019787 -
Stsc120985g00003 2144 Pfam PHD-finger 83 130 IPR019787 -
Stsc120985g00003 2144 ProSiteProfiles Bromodomain profile. 1149 1197 IPR001487 GO:0005515
Stsc120985g00003 2144 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 237 304 IPR001739 GO:0003677
Stsc120985g00003 2144 ProSiteProfiles Zinc finger PHD-type profile. 1256 1306 IPR019787 -
Stsc120985g00003 2144 Gene3D - 381 493 - -
Stsc120985g00003 2144 MobiDBLite consensus disorder prediction 1 32 - -
Stsc120985g00003 2144 MobiDBLite consensus disorder prediction 150 171 - -
Stsc120985g00003 2144 ProSitePatterns Zinc finger PHD-type signature. 1259 1303 IPR019786 -
Stsc120985g00003 2144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 137 IPR013083 -
Stsc120985g00003 2144 MobiDBLite consensus disorder prediction 2123 2144 - -
Stsc120985g00003 2144 CDD PHD1_Lid2p_like 1258 1303 - -
Stsc120985g00003 2144 ProSiteProfiles FYR domain FYRN motif profile. 380 433 IPR003888 GO:0005634
Stsc120985g00003 2144 SUPERFAMILY DNA-binding domain 239 291 IPR016177 GO:0003677
Stsc120985g00003 2144 MobiDBLite consensus disorder prediction 1 26 - -
Stsc120985g00003 2144 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1340 1382 IPR028942 -
Stsc120985g00003 2144 MobiDBLite consensus disorder prediction 2104 2122 - -
Stsc120985g00003 2144 PANTHER OS02G0192300 PROTEIN 14 2140 - -
Stsc120985g00003 2144 SUPERFAMILY Bromodomain 1094 1213 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120985g00003 Stsc-Chr120985 35041 46901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120985g00003 1 2144 C2H2 Transcription Factor Family AT3G01460 44.829 0.0 1677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc120985g00003 Bromodomain 7.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120985g00003 K22768 - gmx:100820223 2897.07