Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120985g00001 ATGTCCGTTCCTGTTGCAACAATTGCTATCCCAATACATTTTTCATTCAACTATCTAAAGTTACCCTCTAATTTTTATGATGCCCATAAACGAGAGCTTTCTCCCATTTTAATATTCGAAGATGAAGTTGGAAAGTCATTCATACTTAATCTCCAGATGGGAGCTGATTTTAAAATTGTTGAGTGCAATGAAGAAGATCTTTTTCCTTTCATGATGGTCGACACCGAGTATTATGCGCCACAATTGCACACAAAAAAATTTGATTTTACTGGAATTAACGGTTATCATTCTTTTAACCAATATGATGTTGAACTCAATCCAAATTGCTCGAGCGAAACTTTAATTGGTTTCCCAACAACGTCGACAAAAGGAAAACAGAATATTCCGCGGCAACTTCTTGAAGTGGTTTTCCCCGATATTCCAAAACAGATCATCATCGAAGACAAACACTCTAAGACATATACAGTTCGCGTTAGAAGGAAGCAGAAGAAACGCAGGACCATGGTATTGGGCAAAGGATGGAAGAAATTCCAAGTGGCTAATGAACTCATGGAAGGTGATATAATCAGAATGTCATTCAACCCAAATTACCCTAATCAGCTTCGCTGTGCTGTTGTTAAGGGATAG 627 0.378 MSVPVATIAIPIHFSFNYLKLPSNFYDAHKRELSPILIFEDEVGKSFILNLQMGADFKIVECNEEDLFPFMMVDTEYYAPQLHTKKFDFTGINGYHSFNQYDVELNPNCSSETLIGFPTTSTKGKQNIPRQLLEVVFPDIPKQIIIEDKHSKTYTVRVRRKQKKRRTMVLGKGWKKFQVANELMEGDIIRMSFNPNYPNQLRCAVVKG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120985g00001 208 ProSiteProfiles B3 DNA-binding domain profile. 111 208 IPR003340 GO:0003677
Stsc120985g00001 208 Coils Coil 207 208 - -
Stsc120985g00001 208 Gene3D - 114 205 IPR015300 -
Stsc120985g00001 208 Pfam B3 DNA binding domain 122 192 IPR003340 GO:0003677
Stsc120985g00001 208 CDD B3_DNA 120 189 IPR003340 GO:0003677
Stsc120985g00001 208 SUPERFAMILY DNA-binding pseudobarrel domain 119 196 IPR015300 -
Stsc120985g00001 208 SMART B3_2 111 206 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120985g00001 Stsc-Chr120985 601 1822 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc120985g00001 B3 1.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120985g00001 - K06972 ath:AT2G24650 38.5058