Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120984g00007 ATGTCTTCAGGGACATCATCCTATTGGTGCTACAGATGCAGTCGATTTGTCAGGGTATGGACCCACGACACTGTCGTTTGTCCCGACTGCGACGGCGGTTTCGTTGAGGAGATCGACCCTCCGCCACGCTCCCTCAACCTCGACGCCCGTCGCCGCAGATTCCCCGCAGCAGCCATGTACATGATCGGCCAGCGCCCCCACTCCTCCGCTGACCAAAACACCAACAGCATCAACAACAACAACAACAACAATAGCTCTGCCATCAACCGCCACGCCCTCCGCCGGACCCGCCGCAACGGCGGCGACCGCTCCCCTTTCAACCCCGTCATCGTCCTCCGTGGCGGGGGCGGATCCTCTGAGTCTCAGGAAAACAGCAACGGCGGCGTAGGAGGAGGGGAAGGACGCGGATTCGAGCTGTTCTATGACGACGGCGCCGGTTCGGGGCTGAGACCCTTGCCGGCAAGCATGTCGGAGTTTCTGCTGGGATCCGGGTTCGATCGGCTTCTAGAACAGCTGTCTCAGATCGAGATCAACGGAATAGGGCGTTACGAGCACCCTCCGGCTTCAAAAGCCGCCATTGATTCGTTACCGACAATCGAAATCGAGGAGAACCACTTGGAGTTGGAATCGCACTGTGCCGTTTGCAAAGAAGCTTTCGAGATGGGAACTTCGGCCAGGGAGATGCCATGTAAGCATATATATCACCAAGACTGTATATTGCCGTGGCTCACACTCCATAATTCCTGCCCGGTTTGCCGCCACGAGTTGCCCTCTGATAACCCTACCAACAGCAGTGGTTCACCGTTGTCGTCGTCCGGGCACTCGGTTGCGTTGACCGAGGATGAGAATGTTGGGTTGACCATTTGGAGGCTTCCCGGTGGGGGATTTGCGGTTGGGAGATTCAATGGTGGGAGGAGAGGTGCTGAGAGGGAGCTTCCTGTTGTTTATACTGAGATGGATGGTGGCTTTAACAATGGTGGTGAGCCGAGGAGGATTTCTTGGTCTTCTAGAGGGAGTCGAGGGAGGCAGAGTGGTGCCTTTCAGAGGTTTTTTAGAAGTTTGTTTGGTTGCTTTAGTGGTGGTGATAATGGTAGGGAGTCTCGCTCCATTAGGGGGAGCTCCTCGCGGTCTCGAATGATGGATCATTCTCCACACTCGAGAAGGACATGGTCTATGGATGTAAACAGTGGAATGAGGTCATGGTGA 1206 0.5564 MSSGTSSYWCYRCSRFVRVWTHDTVVCPDCDGGFVEEIDPPPRSLNLDARRRRFPAAAMYMIGQRPHSSADQNTNSINNNNNNNSSAINRHALRRTRRNGGDRSPFNPVIVLRGGGGSSESQENSNGGVGGGEGRGFELFYDDGAGSGLRPLPASMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIEENHLELESHCAVCKEAFEMGTSAREMPCKHIYHQDCILPWLTLHNSCPVCRHELPSDNPTNSSGSPLSSSGHSVALTEDENVGLTIWRLPGGGFAVGRFNGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGSRGRQSGAFQRFFRSLFGCFSGGDNGRESRSIRGSSSRSRMMDHSPHSRRTWSMDVNSGMRSW 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120984g00007 401 SUPERFAMILY RING/U-box 192 260 - -
Stsc120984g00007 401 MobiDBLite consensus disorder prediction 66 90 - -
Stsc120984g00007 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 259 IPR013083 -
Stsc120984g00007 401 SMART ring_2 212 252 IPR001841 -
Stsc120984g00007 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 72 257 - -
Stsc120984g00007 401 MobiDBLite consensus disorder prediction 363 401 - -
Stsc120984g00007 401 MobiDBLite consensus disorder prediction 65 132 - -
Stsc120984g00007 401 FunFam E3 ubiquitin-protein ligase RING1-like 174 259 - -
Stsc120984g00007 401 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Stsc120984g00007 401 Pfam Ring finger domain 211 253 IPR001841 -
Stsc120984g00007 401 Pfam Protein of unknown function (DUF1117) 284 380 IPR010543 -
Stsc120984g00007 401 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Stsc120984g00007 401 CDD RING-H2_RNF126-like 212 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120984g00007 Stsc-Chr120984 55319 57325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120984g00007 151 266 C3H Transcription Factor Family AT5G01980 41.379 2.25e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120984g00007 K11982 - gmx:100807324 544.658