Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120983g00006 ATGCTGCTCTTACATACTCTATCCACTATGACTATCTCTTCACCAGGATTGTTACCAACTGAGACATTGTTGGATTCTTTGGTTCACATATCAAATGAAGTTGTCTCAATAGAGAAGCTTCCATTTGTGCAAATGAGGAATGTCTCATCAATGATAAGGAGGATCAAGCTTCTCTCTTCATTGTTTGAAGAGATTCAAGAGTCAGAAACACCACCCCCTCCTTCTTCAACTCTTTGCTTCACTGAGCTATTATCAGTGATCACAAGGGTTAAGGTTTTGATCCAAGAAATCAAAGATGGGAGCACCCTTTGGGGCTTAATTCAGTTAGAATTCAAATCAAACCAATTCTATGCTCTTGTGAAAGAGATGGGAAGAGCTCTAGATATATTGCCTCTTAGATTGCTCAACATAACTGCAGATATAAGGGAGCAAGTGGATCTTCTTCACAAGCAAGCGAAGCGAAGCGAGTTAACCATTGATCCTAGGGAGCTTCACAGAAGAGAAATGCTTCTAGAAGTAATGGCCAACAACATGATGCAAAACAAGAAGAACAAGGGCTATATGGATTTTGGTAAAATGGAAGAATTGTTGAGTAGCATTGGTTTGAGAACTATATCAGATTATGATATAGAAATTTCAAAGTTGGAGATTGAAGCTCAGAATCAAGCAGGAACAGGAGGACTAGTGGTTGTGTCAAACATAAACAACCTCATATCTCTTGTTTCTTATTCCAAATCTATGATTTTCAGAGATGGAGGAAATGAAGGTTACAATGAAGAAAGCAAGAAAGAATCTTCTTCATATTTGTACAATAAAGTGAATGATAGTTCTTCATCTTCTCAATCCATGTCAATGATTGCAACTAATGTTCCTGACGAATTTCGCTGCCCGATTTCTCTTGACTTAATGAGGGATCCTGTGATTGTTTCATCCGGCCACACCTATGATCGAAATTCGATAGCGCAGTGGATAAACTCTGGCCACCATACTTGCCCCAAAAGTGGACAGAGGCTAATTCACACTGCTCTCATACCAAACTATGCACTGAAAAGTCTTGTTCAGCAATGGTGCCATGACAACAATGTTCCAGTGAATGAGCCTAATTCTTCAGTTTCAGAGGAAAAGAGCAATAAGAAGAACTCGAACGAAGGCGCTATCGATCACATCTCTGCCAACAAAGCGGCTGCAGATGCTGTGAAAATGACAGCAGAGTTTCTTGTTGGGAAATTGGCAACAGGCTCAGCTGAAACACAAAGACAAGCTGCATACGAGCTTCGTTTGCTCGCAAAAACCGGCATGGACAACAGGCGAATCATAGCAGAGGTAGGTGCTATTCCTTTTCTGGTAACACTACTTGGATCACATGATCCTAGAATCCAGGAACATGCTGTCACTGCCATGTTTAACCTATCAATCTATGACAACAACAAAGTTCTGATCATGTCGGCGGGCGCAGTGGACAAAATAGTCCAAGTTCTAGAACAAGGGAAAACAATGGAAGCTAGAGAGAATGCTGCGGCAACTATATTCAGCTTGACTATGCTAGATGAATGCAAGGTTCAAATCGGGGCGCGGCCGAGGGCGGTTCCTGCATTAGTATTACTCTTGAAAGAAGGCACACCAATTGGAAAAAGGGATGCAGCAACTGCACTATTCAACCTTGCAGTTTACAATCCAAACAAATCAATAATTGTGAATTCTGGTGCAGTTGATGTGCTTATTGAATTGCTAATGGATGACAAAGCTAGCATTACTGATGATGCATTATCTGTTCTTGCTTTGTTACTTGGTTGCTCAAAAGGACTACAAGAAATTAGGAATAGCAGAGAATTGGTGCCTCTTCTTATTGATCTTCTAAGATTTGGATCGGTGAAAGGGAAGGAAAATTCTATTACACTTCTCTTAGGATTGTGCAAGGAAGAGACCGAGGTGGTTGCGCGGCGGCTGTTGGCGAATCCACGGAGTGTGCCTTCGCTTCAAAGTTTGGCTGCTCATGGCTCTTTGAGAGCTAGGAGGAAGGCTGATGCATTGTTAAGGTTGCTAAATAGATGTTGCTCTCAGGCTCATCATTCTGCTTGA 2079 0.4156 MLLLHTLSTMTISSPGLLPTETLLDSLVHISNEVVSIEKLPFVQMRNVSSMIRRIKLLSSLFEEIQESETPPPPSSTLCFTELLSVITRVKVLIQEIKDGSTLWGLIQLEFKSNQFYALVKEMGRALDILPLRLLNITADIREQVDLLHKQAKRSELTIDPRELHRREMLLEVMANNMMQNKKNKGYMDFGKMEELLSSIGLRTISDYDIEISKLEIEAQNQAGTGGLVVVSNINNLISLVSYSKSMIFRDGGNEGYNEESKKESSSYLYNKVNDSSSSSQSMSMIATNVPDEFRCPISLDLMRDPVIVSSGHTYDRNSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHDNNVPVNEPNSSVSEEKSNKKNSNEGAIDHISANKAAADAVKMTAEFLVGKLATGSAETQRQAAYELRLLAKTGMDNRRIIAEVGAIPFLVTLLGSHDPRIQEHAVTAMFNLSIYDNNKVLIMSAGAVDKIVQVLEQGKTMEARENAAATIFSLTMLDECKVQIGARPRAVPALVLLLKEGTPIGKRDAATALFNLAVYNPNKSIIVNSGAVDVLIELLMDDKASITDDALSVLALLLGCSKGLQEIRNSRELVPLLIDLLRFGSVKGKENSITLLLGLCKEETEVVARRLLANPRSVPSLQSLAAHGSLRARRKADALLRLLNRCCSQAHHSA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120983g00006 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 443 485 IPR000225 GO:0005515
Stsc120983g00006 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 364 IPR013083 -
Stsc120983g00006 692 MobiDBLite consensus disorder prediction 364 386 - -
Stsc120983g00006 692 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Stsc120983g00006 692 Gene3D - 498 690 IPR011989 -
Stsc120983g00006 692 SMART arm_5 473 514 IPR000225 GO:0005515
Stsc120983g00006 692 SMART arm_5 432 472 IPR000225 GO:0005515
Stsc120983g00006 692 SMART arm_5 557 597 IPR000225 GO:0005515
Stsc120983g00006 692 SMART arm_5 518 556 IPR000225 GO:0005515
Stsc120983g00006 692 SMART arm_5 598 639 IPR000225 GO:0005515
Stsc120983g00006 692 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Stsc120983g00006 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 527 569 IPR000225 GO:0005515
Stsc120983g00006 692 FunFam RING-type E3 ubiquitin transferase 364 520 - -
Stsc120983g00006 692 CDD RING-Ubox_PUB 291 343 IPR045210 -
Stsc120983g00006 692 SUPERFAMILY ARM repeat 404 681 IPR016024 -
Stsc120983g00006 692 Gene3D - 384 497 IPR011989 -
Stsc120983g00006 692 SUPERFAMILY RING/U-box 277 364 - -
Stsc120983g00006 692 PANTHER U BOX DOMAIN-CONTAINING 45 686 - -
Stsc120983g00006 692 FunFam RING-type E3 ubiquitin transferase 289 363 - -
Stsc120983g00006 692 Pfam Armadillo/beta-catenin-like repeat 558 593 IPR000225 GO:0005515
Stsc120983g00006 692 Pfam Armadillo/beta-catenin-like repeat 434 471 IPR000225 GO:0005515
Stsc120983g00006 692 Pfam U-box domain 290 360 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120983g00006 Stsc-Chr120983 72378 74585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120983g00006 26 692 U-box Gene Family AT3G46510 37.313 1.32e-125 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120983g00006 - - gmx:100793498 999.193