LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120983g00003	ATGGCCGCTTCCGTACGTGTAAAAGAGGCCCTCGTTATTACTCCCTCCGAGCCCACGCCAGCCCGCGTCCTCCCTCTTTCAGCTCTTGACTCCCAACTCTTCCTTCGTTTCACCGTAGAATACCTCTTGGTCTACCGGGCCTGGCACGGGCTTGACCAGGCTTCCACCACAACACGTCTAAAATTGGCATTAGCTGAAGCACTCGTTCCCTATTATCCATTTGCAGGCAGGATCAGGCCCAGGCCAGACTCCCCGGGCCTTGAGGTGGTCTGCCGAGCCCAGGGCGCAGTGTTCATTGAGGCCTTTTCTGACCGTTACAGTTCTAAAGACTTAGAGAAACCGCCGAAAACCGTTTCTCAGTGGAGAAAACTGTTGTCCCTCCACGTGGCAGACGTTCTAAGAGGATCCCCGCCGCTGGTCGTTCAGCTTACGTGGCTCCGCGACGGTGCAGCCGCTATCGCCGTTGGGATCAGCCACTGTATCTCCGATGGAATCGGAAGCGCAGAGTTCCTCAACTACTTCGCGGAGTTAGCTTCTGGAAAAGGCGTCGCCGGTTCAAGACCGAAGCCTGTTTGGGACCGTCACCTCCTGAATCCGCCGCCACCGGCGGGGAAGAAACGCGCCCGGGTCAACTCGGCGAGTCACCCAGAGTTTCACCGAGTGGCTGACCTCTGTGACTTCATGAACCTGGTCTCTACTGAACTGAAGCCTACCTCCATCACCTTCGATAAAATGCGGCTCGGCGAGTTGAAGAGGCTCGCCCGGTGCACGAGTCAACCCGGCGACGAGTCATCGTCGTTCTACACGTCTTTCGAGGTTCTTGCTGCTCACGTGTGGAGGAGCTGGGCCAGAGCACTGGAATTTCCGCCAAATCAGGTGTTGAAGCTACTTTTTAGCATAAACGTACGGAACCGGGTCAAGCCGGGTTTACCAGAAGGTTACTACGGCAACGCATTCGTATTGGGATGCGCAGTGACGAAAGCTGGGGAGCTGGAGGAGAAAGGAATCGGGTACGGATCGGGTTTGTTGAGAAGGGCGAAGGAAAGAGTGGGGAAGGAGTATGTGAGGGAGGTGAGTGAGTTGGTGAGCGAGTCAATGGCAAATCCAGACTCAGTTGGAGTGCTTATAGTGTCGCAGTGGTCACGGTTGGGAATGGAGAGGGTAGATTTCGGAATGGGGAAGCCGGTGCACGTGGGATCGGTGTGCTGCGACAGATACTGTTTGTTTTTGCCGGCGAGTGATGAAGATGATGAGAGTGTGAAGGTGATGGTGGCGGTGCCTACTTTCGCCGTTGACAGTTACCACTTTTTGATGCAAGATTCCAATCTTTAG	1332	0.5526	MAASVRVKEALVITPSEPTPARVLPLSALDSQLFLRFTVEYLLVYRAWHGLDQASTTTRLKLALAEALVPYYPFAGRIRPRPDSPGLEVVCRAQGAVFIEAFSDRYSSKDLEKPPKTVSQWRKLLSLHVADVLRGSPPLVVQLTWLRDGAAAIAVGISHCISDGIGSAEFLNYFAELASGKGVAGSRPKPVWDRHLLNPPPPAGKKRARVNSASHPEFHRVADLCDFMNLVSTELKPTSITFDKMRLGELKRLARCTSQPGDESSSFYTSFEVLAAHVWRSWARALEFPPNQVLKLLFSINVRNRVKPGLPEGYYGNAFVLGCAVTKAGELEEKGIGYGSGLLRRAKERVGKEYVREVSELVSESMANPDSVGVLIVSQWSRLGMERVDFGMGKPVHVGSVCCDRYCLFLPASDEDDESVKVMVAVPTFAVDSYHFLMQDSNL	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120983g00003	443	PANTHER	TRICHOTHECENE 3-O-ACETYLTRANSFERASE	13	426	-	-
	Stsc120983g00003	443	Gene3D	-	3	219	IPR023213	-
	Stsc120983g00003	443	Pfam	Transferase family	4	428	-	-
	Stsc120983g00003	443	Gene3D	-	230	434	IPR023213	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120983g00003	Stsc-Chr120983	32000	34356	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120983g00003	5	426	Monolignol Biosynthesis Gene Families	AT5G48930	28.345	7.58e-40	146

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120983g00003	-		-	gmx:100817048	652.129