Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120983g00001 ATGGAAATTTCAGAACACCACCCCCCACTTAACCCAAACCCTAACGATCCCCAAGAAACCAAACCCACCGCCATCACCGCCACAATCACCACTCTTTCTCCAACACCTAACAACAGCAGCAGCAGCAGTGATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAGCAATAACAGTAGCAGCAGTAACTGCACCGCTGAGAAAACCATTAATAACCGCAAGTGCAAAGGAAAAGGTGGACCTGACAACAACAAGTTTCGTTACCGCGGCGTCAGGCAGCGGAGTTGGGGGAAATGGGTGGCGGAGATAAGAGAACCACGCAAGAGGACAAGGAAGTGGCTCGGAACATTCGCTACCGCTGAAGATGCCGCCAGGGCTTACGACCGTGCTGCCTTGTTCCTCTACGGTTCCAGGGCGCAGTTGAATCTGCAACCTTCAATTTCCGTCAATTCTAACTCTTCTACTTCCTCTTCTCGTGGCGGTTCCTCTTCTTCTTCTTCCTCCACCCAAACTCTTAGGCCTTTGCTTCCTCGCCCTTCCGGGTTCACCTTCTCTTCCGGTTCCCGGTTCCCGGTGGTGTTTAACGGCCTCCACAACAATAATAACAACTTCACTGCTGCAGGTGCCCCGAGTTTCGTGCCATTTGGGGTTTACCCTTTTAGTAACGGTAATAATAACATTGTTGCACCACCACCGGTGCAGTTTCATCATCAGTGTTCACCACAAGTTTTGCAAATTCAGCAGCATCAGCAGATTCAGCAGCATCAGCAACAACAGGCTCATCATCGGCATCAAAAAGCTAATGAATCAGGTGGAACAAGTTCAATTAAGTTAGCCTCGCCCTCGCATCAGAATAATAATAATACTGCTACTAATAATGATAACCATCATCATCATCATGTTCCGGGTTATGTTCATCATCACCAACAAGATAATTGCATGGTTATGGAAGAAATATTGAATGATGATAATCCCTTGGTGGCTTCATCAACCTTGTCTTCCTCAGAGGTTGGAATAGATGCAGTGGCGGATCCGGATCCGGATCCAGAACCGGGTATCGGATCTATGTGGTCTTCGTTGACGAATGAGGAGGAGTATCCAGTGAGCTTGTGGGATTACAATTACAACGATCCATACTTTTGTTTGAGTTTTGAAGAAATTTGA 1173 0.4569 MEISEHHPPLNPNPNDPQETKPTAITATITTLSPTPNNSSSSSDNNNNNNNNNNNNNNSNNSSSSNCTAEKTINNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAALFLYGSRAQLNLQPSISVNSNSSTSSSRGGSSSSSSSTQTLRPLLPRPSGFTFSSGSRFPVVFNGLHNNNNNFTAAGAPSFVPFGVYPFSNGNNNIVAPPPVQFHHQCSPQVLQIQQHQQIQQHQQQQAHHRHQKANESGGTSSIKLASPSHQNNNNTATNNDNHHHHHVPGYVHHHQQDNCMVMEEILNDDNPLVASSTLSSSEVGIDAVADPDPDPEPGIGSMWSSLTNEEEYPVSLWDYNYNDPYFCLSFEEI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120983g00001 390 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
Stsc120983g00001 390 Pfam AP2 domain 90 139 IPR001471 GO:0003700|GO:0006355
Stsc120983g00001 390 MobiDBLite consensus disorder prediction 272 295 - -
Stsc120983g00001 390 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Stsc120983g00001 390 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Stsc120983g00001 390 FunFam Ethylene-responsive transcription factor 2 90 148 - -
Stsc120983g00001 390 MobiDBLite consensus disorder prediction 74 92 - -
Stsc120983g00001 390 SUPERFAMILY DNA-binding domain 90 148 IPR016177 GO:0003677
Stsc120983g00001 390 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 44 361 - -
Stsc120983g00001 390 ProSiteProfiles AP2/ERF domain profile. 90 147 IPR001471 GO:0003700|GO:0006355
Stsc120983g00001 390 CDD AP2 90 147 IPR001471 GO:0003700|GO:0006355
Stsc120983g00001 390 SMART rav1_2 90 153 IPR001471 GO:0003700|GO:0006355
Stsc120983g00001 390 MobiDBLite consensus disorder prediction 150 183 - -
Stsc120983g00001 390 MobiDBLite consensus disorder prediction 1 92 - -
Stsc120983g00001 390 MobiDBLite consensus disorder prediction 17 73 - -
Stsc120983g00001 390 MobiDBLite consensus disorder prediction 249 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120983g00001 Stsc-Chr120983 2951 4123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120983g00001 76 222 AP2-EREBP Transcription Factor Family AT2G40220 68.000 9.64e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120983g00001 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120983g00001 K09286 - rcu:8265379 206.453