Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120982g00022 ATGGAACTTAATTTTAAGTACCAATTAGGCCTTGTTATTAGTGTTATAATGCTGTTACCTTTAATGTGTACCTCTCAAGACTCATTTACGTGTTCCAGAGCAACATATTATGGTAGCCCAGAATGCACTGCCAACCCAAGGGGAGCTTGTGGCTTCGGCGAATATGGAACGTTGATAAACGATGGCAGCGTGGCAGGCGTGTCTTGGCTATGGCGGAATGGATCTGGCTGTGGTGCATGCTATCAAGTTAGGTGCAAAATAGCAGAATGCTGCGATGACTATGGAGCATATGTGGTGGTAACAGACTTCGGTGTGGGAGACAGAACTGACTTCATCATGAGTCCACGTGCTTATTCAAGATTGGGGAAGAACGAAGACGCATCTGCAGAGCTTTTCAAATATGGCGTCGTGGACGTAGAATACAAGAGGGTACCATGCAGATACGGTAGCTATAACATCGTAGTGAAGGTGCATGAACGCAGCTACAACCCACACTACTTAGCCATTGTCACTCTCTATGTTGGAGGAACACAAGACATAACTGCAGTCCAGTTCTGGCAGGAAGATTGCAATGAGTGGAGGGCAATGAGAAGGGCGTTTGGGACTGTGTTTGATGTTGAGAACCCACCAAGGGGTGACATAAAGTTAAGGTTCCAAGTGAGTGGCAGTGCAGGGGTGTATTGGGTAGAGTCCAAGAATGTTATCACCAGTGATTGGAAGGCTGGAGCATTTTATGATACTCAAATCCAGCTTGAATAG 759 0.4598 MELNFKYQLGLVISVIMLLPLMCTSQDSFTCSRATYYGSPECTANPRGACGFGEYGTLINDGSVAGVSWLWRNGSGCGACYQVRCKIAECCDDYGAYVVVTDFGVGDRTDFIMSPRAYSRLGKNEDASAELFKYGVVDVEYKRVPCRYGSYNIVVKVHERSYNPHYLAIVTLYVGGTQDITAVQFWQEDCNEWRAMRRAFGTVFDVENPPRGDIKLRFQVSGSAGVYWVESKNVITSDWKAGAFYDTQIQLE 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120982g00022 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Stsc120982g00022 252 Pfam Lytic transglycolase 64 141 IPR009009 -
Stsc120982g00022 252 PANTHER EXPANSIN-B3 18 250 - -
Stsc120982g00022 252 Gene3D - 20 146 IPR036908 -
Stsc120982g00022 252 SUPERFAMILY Barwin-like endoglucanases 16 148 IPR036908 -
Stsc120982g00022 252 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Stsc120982g00022 252 Gene3D - 147 248 IPR036749 -
Stsc120982g00022 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Stsc120982g00022 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Stsc120982g00022 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Stsc120982g00022 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Stsc120982g00022 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Stsc120982g00022 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Stsc120982g00022 252 Pfam Expansin C-terminal domain 153 235 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120982g00022 Stsc-Chr120982 82674 84106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120982g00022 9 251 Expansin Gene Family AT4G17030 62.295 3.82e-114 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120982g00022 - - ccaj:109800044 439.499