Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120982g00021 ATGCCTGGTTCCACTGCTTGGATGGAAAATATGGTAACTAGAAGATATTTTCCTCGAAGAAAAGTTTCAGCTATTAGAGACTTTCCTCCTTTATGTGGACGCAATGCTCCATGTCTCAATATGGACGAGGGTCTAAAGGAAATGCCTTTGCTGAATGACAGTAGAGTGGTTGAACAGAACATTCCTGTAAATGATGACCTGTTGAAAAAAGTAGCTGCTGCTGAAATGAAGGAAGTTGAAAACAATGCTCAAGATGAAGACGAGGGTCTAAAGGAAATACCTTTGCTGAATGACAGTAGAGTGGTTGAACAGAACATTCCTGTAAATGACGACCTGTTGAAAAAAGTAGCTGCCACTGAAATAAAGGAAGTTGAAAACAATGCTCAAGATGAACTTTCTCGCAAGAGAAAGTTTGCGGACATGGGTTTAGCTGATTCTGAAGGGAATACTACAGAGAAGGTGAATAAGCTGGATGTATATGAACCATCTATTGGGATTAATAAGCAACACAAAAACACCAGAGATAAGAAAATCACACTTACTGCAGAGATTGATCATCATCAGGCTGAAATAAATTCTAGTGAAGTGGAAAATGATGATGCTATACCAGTTGAGAAGACATCAGGAATGGAAATTATAGTGCACCCTGAAGTCCGGGCTCTTGAGGCAAAGCCTTTGCGAGCTGTATCAAACAGGAAAGTAGTGCTTGGGTTGATGTCTGTGTCAGAATGTCCTCAGAGGTCTAATAATGATCCCTCCAATTCTAAAAGGATTAAAGGTCAAAAGGAAAGCAAAGGAAAGAAAGATGGTGCCTTGGTACGGCTTGGCAGGTCTACGACTGCTACTAGGACAAAATATGGCACAAATCTTTCTGGGTTGGAGCCCCTGAAGAAGAAAAATAAAAATGTTGCTTCCCATGGCATAGGTCAATTAGAAATTTCGGACAAGCATTCTGTTGATCCGAATGAAAATGTTGTGGGCTTTGAAACTGGTCCTAAATCAGGTAGGAAAGTCAATGTTCCTCCTCATAAATTGAGTGGTAATGGGAATCACTCAAATGTGACTCGACATAAAGTGAGGGAAACACTAAGGCTTTTTCAAGCTGTTGCTAGAAAGATTTTGCAGGAAGTAGAAGCAAAAAATGAGAGGGCAAGGGTTGACTTACAAGCAGCAAAGGTCCTTAAGGAGAAGGGGAAATATGTTAATGAAGGTAAGCAGATCCTTGGACATGTCCCTGGCATTGAAGTTGGTGATGAATTTCACTATAGAATTGAGCTTAATATAGTTGGCCTTCATCGCCAAACTCAGGGTGGTATAGATTATGTGAAGCACAACGGTAAGATTCTTGCAACAAGTATTGTTGCATCGGGGGGCTATGCTGATGATTTGGATAATTCAGATGTATTGATATATACAGGGCAAGGTGGCAACGTGATGAACTCTGGTAAAGAACCTGAAGATCAGAAGCTTGAACGGGGAAATCTTGCTTTGAAGAATAGTAATGACGAACAGAACCCTGTTAGGGTGATACGTGGTGCTGATTCGGCGGATGGAAAGTCCAAGACATATGTTTATGATGGACTGTATCTAGTTGAGTCAGTTTGGCAGGATATGGGGCCACATGGGAAGCTGGTATATAAGTTTCGGTTGCGTAGAATCTCTGGTCAACCAGAGCTTCCTTTGAAGGAATTGAAGAAATCTAAAAAGTTCAAAACAAGAGAAGGTCTATGTGTTAATGATATTTCTTATGGGAAAGAGCGAATTCCTATATGTGCTGTGAATGTCATAGATGATGAAAAACCCCCACCTTTTAAATACATAACTAGCATGATTTATCCTGATTGTGATCTCATTCCTGCAGAAGGATGTGGTTGCATTAACGGATGTTCTGAGTTGAAATGTTCTTGTGTAGTGAAGCATGGGGGTGAAATCCCATACAATCACAATGGGGCTATTGTAGAAATAAAGACTCTAGTTTTTGAGTGTGGACCTTCTTGCAAGTGCCCTCCGACTTGCTATAACAGAGTCAGTCAACATGGCATAAAATTTCAACTTGAAATTTTTAAGACCAGTACAAGGGGATGGGGTGTGAGATCCCTAAATTCCATCCCTTCAGGAAGTTTTATCTGCGAATATATGGGAGAGCTTCTTGAAGATAAGGAGGCAGAACGAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTATACAAACAATCCTCTTTGGGACGGGCTTTCGACCCTTATGCCTGATGCAGAGTCAAGTTCTGGTGGAGTTTTGATGGATGATTGTGGCTTCACCATTGATGCTGCTCAGTATGGTAATGTGGGGAGATTCATCAACCACAGTTGTTCTCCAAATCTGTATGCTCAAAACGTGCTTTACGATCATCATGACAAAAGGATGCCTCACATAATGTTCTTTGCTGCTGAGAACATTCCTCCTCTGCAAGAGCTGACTTATGACTACAATTACATGATCGACCAGGTCCGCGACTCCGATGGCAATATAAAACGGAAGGATTGCTACTGTGGTTCTGTTGAATGTATAGGTAGGATGTACTGA 2574 0.4091 MPGSTAWMENMVTRRYFPRRKVSAIRDFPPLCGRNAPCLNMDEGLKEMPLLNDSRVVEQNIPVNDDLLKKVAAAEMKEVENNAQDEDEGLKEIPLLNDSRVVEQNIPVNDDLLKKVAATEIKEVENNAQDELSRKRKFADMGLADSEGNTTEKVNKLDVYEPSIGINKQHKNTRDKKITLTAEIDHHQAEINSSEVENDDAIPVEKTSGMEIIVHPEVRALEAKPLRAVSNRKVVLGLMSVSECPQRSNNDPSNSKRIKGQKESKGKKDGALVRLGRSTTATRTKYGTNLSGLEPLKKKNKNVASHGIGQLEISDKHSVDPNENVVGFETGPKSGRKVNVPPHKLSGNGNHSNVTRHKVRETLRLFQAVARKILQEVEAKNERARVDLQAAKVLKEKGKYVNEGKQILGHVPGIEVGDEFHYRIELNIVGLHRQTQGGIDYVKHNGKILATSIVASGGYADDLDNSDVLIYTGQGGNVMNSGKEPEDQKLERGNLALKNSNDEQNPVRVIRGADSADGKSKTYVYDGLYLVESVWQDMGPHGKLVYKFRLRRISGQPELPLKELKKSKKFKTREGLCVNDISYGKERIPICAVNVIDDEKPPPFKYITSMIYPDCDLIPAEGCGCINGCSELKCSCVVKHGGEIPYNHNGAIVEIKTLVFECGPSCKCPPTCYNRVSQHGIKFQLEIFKTSTRGWGVRSLNSIPSGSFICEYMGELLEDKEAERRTGNDEYLFDIGNNYTNNPLWDGLSTLMPDAESSSGGVLMDDCGFTIDAAQYGNVGRFINHSCSPNLYAQNVLYDHHDKRMPHIMFFAAENIPPLQELTYDYNYMIDQVRDSDGNIKRKDCYCGSVECIGRMY 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120982g00021 857 MobiDBLite consensus disorder prediction 327 353 - -
Stsc120982g00021 857 MobiDBLite consensus disorder prediction 243 273 - -
Stsc120982g00021 857 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 236 850 - -
Stsc120982g00021 857 Gene3D - 390 572 IPR036987 -
Stsc120982g00021 857 SMART preset_2 578 667 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120982g00021 857 Pfam SAD/SRA domain 408 556 IPR003105 -
Stsc120982g00021 857 Gene3D SET domain 573 857 IPR046341 -
Stsc120982g00021 857 ProSiteProfiles SET domain profile. 683 827 IPR001214 GO:0005515
Stsc120982g00021 857 ProSiteProfiles Pre-SET domain profile. 621 680 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120982g00021 857 Pfam Pre-SET motif 581 675 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc120982g00021 857 SMART PostSET_3 841 857 IPR003616 -
Stsc120982g00021 857 SMART set_7 683 833 IPR001214 GO:0005515
Stsc120982g00021 857 Pfam SET domain 694 827 IPR001214 GO:0005515
Stsc120982g00021 857 ProSiteProfiles YDG domain profile. 409 552 IPR003105 -
Stsc120982g00021 857 Coils Coil 374 394 - -
Stsc120982g00021 857 SUPERFAMILY PUA domain-like 390 565 IPR015947 -
Stsc120982g00021 857 SUPERFAMILY SET domain 568 828 IPR046341 -
Stsc120982g00021 857 ProSiteProfiles Post-SET domain profile. 841 857 IPR003616 -
Stsc120982g00021 857 MobiDBLite consensus disorder prediction 256 272 - -
Stsc120982g00021 857 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 204 857 IPR025794 GO:0016571
Stsc120982g00021 857 SMART G9a_1 404 556 IPR003105 -
Stsc120982g00021 857 CDD SET_AtSUVH-like 602 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120982g00021 Stsc-Chr120982 78683 82028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120982g00021 291 856 Su(var)3-9 homologs AT5G04940 38.487 7.62e-116 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc120982g00021 SAD_SRA 5.3e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120982g00021 K11420 - gmx:100776895 991.49