Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120982g00018 ATGGGCAAGCAAGGACCTTGCTATCACTGTGGAGTTACAAGTACACCACTTTGGCGCAATGGGCCACCGGAGAAGCCAGTGCTATGCAATGCATGTGGATCTCGATGGAGAACAAAGGGGACACTTGCAAATTATACCCCTCTACATGCTCGAGCAGAAGCTGATGATAGTGAGGATCAAAGGGTTTCCAGGGTAAAGATTATATCATCACATAAGAACAAAGAAATGAAATTGCTAAAACGAAAGCAGAATCATGATAGTGTTGTGGTATCTGGTGGCTTCACCCCTGATTACAAGTACAACGAAGGATTCGGAAAGGCTGTAGATGAAGATACAAGCAATCGTTCGAGTTCAGGATCAGCTATCTCTAACACAGAGAGTTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCTCAATCCGTCGTCTGGGAAGCCATGGTGCCTTCGAAAAAGAGGACCTGCGTGGGTCGTCCAAAGGCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGCACTATACTTCATGAACAACAATCTTATTTTTCTACATCTTCTGAAGAGGAACTTCTTTTTGAAAGTGAAACACCTATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTTATAAGACATCCTAGTTATATAGCTCGCGAAGAAGTGTCTGAGACTAGCTCTCTTTCAGTTGATAATAAACAATCTTTAATGAGTGATACATATTCATATTCTGGTCCCTTTCTTATGTATAATGATTCGACTGGTATGAACTTCTCATCCTATGGAGTCGACAAGGTTGAGAATTCTGCTGACCAAGAAACGCAGGAGGAGCAACTTAAAAGTGACAAATCTCAGCTTGAGAGAGTACAAACATACCTTGGAGATCATAATTCACCACTGTGCTCAATAGATTTAAATGATGTAGTAAACTACAAGGAGTTTGTGAGAAACATGACAAATGAAGACCAACAGCTATTACTAAAGTTTCTTCCTATGGTTGATACTGCTAAACTTTCTGATAGCCTCAAAGTCATGTTCAATAGCTCTCAATTCAAGGAGAACTTGACTTATTTTCAGCAGCTTCTTGGGGAAGGTGTCTTCGACATCTCTTTGTCAGGGGCAAAACCTGAAGACTGCAAAACTTTGAAAAGGCTTGCATTATCCAATCTGTCAAAGTCGAAATGGGTAGAACATTATAGTTATCTTAAGAGATGTAAGACCACAGCTGCAAAATCCATTAATCAGGGATCAACTGGTAAAGCATCATCTAATTTTGCAAATGTGAAGAGATTGCGTGATGGCCGAAATCATAACTCCCCAGAACTGAAGACCATGATGAGGAGCCCCAAAGGAATGACCATAAAGATTGGCAGCGAGGGCAAAGAAGTTGTAGAAGATGGCTCATGCTATAGTCCAAAAAGCCTGTTTGCTTTGCCCCCTGATGCTGCCTCCCTCTTGCAAGATTCTTCGAACTTTGTTGAGGAGAGTTCTGATCATGATCTTTTGGTAGAGGTGCCATCTAATAGTTCATTCCCACAGGCAGAACTTCTGCACCCAACATCAAGCTTTGGTGCTCAGGCAAGCACAAGTAGCAGCTCAGTGTACTCACATTTTGTCCATAATTAA 1635 0.4165 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEADDSEDQRVSRVKIISSHKNKEMKLLKRKQNHDSVVVSGGFTPDYKYNEGFGKAVDEDTSNRSSSGSAISNTESCAQFGGTDASDLTGPAQSVVWEAMVPSKKRTCVGRPKASSVEKLTKDLCTILHEQQSYFSTSSEEELLFESETPMVSVEIGHGSVLIRHPSYIAREEVSETSSLSVDNKQSLMSDTYSYSGPFLMYNDSTGMNFSSYGVDKVENSADQETQEEQLKSDKSQLERVQTYLGDHNSPLCSIDLNDVVNYKEFVRNMTNEDQQLLLKFLPMVDTAKLSDSLKVMFNSSQFKENLTYFQQLLGEGVFDISLSGAKPEDCKTLKRLALSNLSKSKWVEHYSYLKRCKTTAAKSINQGSTGKASSNFANVKRLRDGRNHNSPELKTMMRSPKGMTIKIGSEGKEVVEDGSCYSPKSLFALPPDAASLLQDSSNFVEESSDHDLLVEVPSNSSFPQAELLHPTSSFGAQASTSSSSVYSHFVHN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120982g00018 544 Coils Coil 272 292 - -
Stsc120982g00018 544 FunFam GATA transcription factor 27 3 85 - -
Stsc120982g00018 544 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Stsc120982g00018 544 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Stsc120982g00018 544 Pfam Asx homology domain 285 371 IPR028020 -
Stsc120982g00018 544 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Stsc120982g00018 544 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 299 411 IPR044867 -
Stsc120982g00018 544 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Stsc120982g00018 544 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Stsc120982g00018 544 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Stsc120982g00018 544 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Stsc120982g00018 544 PANTHER OSJNBB0038F03.10 PROTEIN 1 542 IPR044589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120982g00018 Stsc-Chr120982 71675 76170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120982g00018 1 521 C2C2-Gata Transcription Factor Family AT4G17570 52.052 1.40e-156 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc120982g00018 ASXH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120982g00018 - - gmx:100798504 781.556