Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120982g00001 ATGTGTGAACAAAGCAGTTACGATTCCGATATGGCGCTACTCGACTCAATTCGCCGTCACTTGCTAGGAGAGGCCGACCCGTTTTTATCCGGATCGCCGAATTGTAATTCGGGTACCGCACCGGTTTTCTGCCGGAGCTCCAGCTTCAGCAGCTTGTACCCTTGTCTGAGCGAAAATTGGGGGGAATTGCCGCTCAAAGAAGACGATTCAGAAGATATGGTTCTATACGGTGTTCTCCGAGACGCTGTAAACGTCGGGTGGGTCCCTTCTCTCGAAGCTGGATCACCCGAAGAATTCTCATCGGGTTACTTGCCCGCCGTGACGGTTAAATCTGAGCCGGATCTATTTCCTTCGGTGCCAAGCCTCCTGGAGTCTGTAACCGCCACCGTGGCAGCACCGATGGAACAGAAACCTGCTCCTGTTCCGGCTCCGGCGAAGGGAAAGCATTACCGAGGAGTGAGGCAGCGACCGTGGGGGAAGTTCGCTGCGGAGATTCGTGACCCGGCGAAAAACGGTGCTAGGGTTTGGCTAGGAACATTCGAAACCGCGGAGGACGCAGCTTTAGCTTACGACCGCGCCGCCTACAGAATGCGCGGTTCTCGAGCACTGTTGAATTTTCCACTCCGGGTGAACTCCGGCGAACCTGATCCCGTTAGGGTGACGTCTAAGCGGTCGTCGCCGGAGCCTTCATCATCGTCGGATAGTGGATCGTCGACGAAGAAGAGAAAGAAGGCGGTGGTGAGAGGTCAGGTAGAGATGAAGACAGGGCAAGTAGGGAGTCAAGTGGCTCATTGTACACGTGGCGAGCAGTTATTGGTTAGCTGA 825 0.5515 MCEQSSYDSDMALLDSIRRHLLGEADPFLSGSPNCNSGTAPVFCRSSSFSSLYPCLSENWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLEAGSPEEFSSGYLPAVTVKSEPDLFPSVPSLLESVTATVAAPMEQKPAPVPAPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPEPSSSSDSGSSTKKRKKAVVRGQVEMKTGQVGSQVAHCTRGEQLLVS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120982g00001 274 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Stsc120982g00001 274 Pfam AP2 domain 149 199 IPR001471 GO:0003700|GO:0006355
Stsc120982g00001 274 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Stsc120982g00001 274 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Stsc120982g00001 274 PRINTS Ethylene responsive element binding protein signature 173 189 IPR001471 GO:0003700|GO:0006355
Stsc120982g00001 274 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Stsc120982g00001 274 MobiDBLite consensus disorder prediction 210 261 - -
Stsc120982g00001 274 Gene3D AP2/ERF domain 148 210 IPR036955 GO:0003700|GO:0006355
Stsc120982g00001 274 SUPERFAMILY DNA-binding domain 149 209 IPR016177 GO:0003677
Stsc120982g00001 274 FunFam Ethylene-responsive transcription factor 2 148 208 - -
Stsc120982g00001 274 PANTHER DNA-BINDING DOMAIN 138 242 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120982g00001 Stsc-Chr120982 3690 5271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120982g00001 1 273 AP2-EREBP Transcription Factor Family AT4G17500 55.088 7.68e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120982g00001 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120982g00001 K09286 - qsa:O6P43_024387 343.199