Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120981g00005 ATGGTGATCATCAAGTATGGTGTTGCTAGCAGAACAAGAAGCAAGAGGAAAGAAAATTTTTTGAGTTCGTCTCCAAGTATTAGAAAAGGATCACCGCCTGATTTTGAGTTCCTAGGAGAAGAAGAAGTAAAGCATGCATCTGAAGGAAAAAGGAAGCTTTTTTCGCATGGTGGTGATAGCAGTTCTTCTGGTGGTGCTCGAGCAATGGCCTCTTCTTCGTCATCAAAGTCCAGAGGGAGAAAGAGGAGCAGAGGAGGTAGTAGTTTGAGGGGGAGAACGAAGGTTGAAGATGACTTCGTTTTTCTGGGATGTGATGATGAGATTCTCGCAGAATCTTGGTTCGAACCTCAGCAACCTCTTGAGATGCCTCCGCCGAGAGAAGTGATTGAACTCAGCGAGGATAGTGATAACAATGCAGCAGAAAAGCCGTTGCAGAATCATGAAGAGTTTCAACAAAGAAATTTGTGTGTTAAGGAAGAGAAGATTGAAGATGAAGAAAGAGATGTGCCTCCTGCGGCTGCTGCTAAAAGTTCTGGATTTGTTGCTGTAAATCCTATAATTATTAGTCTGAGTGATGGGGATGATGAAGGAAGTGAAAGAAATTTTGACTTGGAATTTTGTTATTCATCAAGTGATTCAGAGGACAATGATTCTAGCGATGATGAAGATTTCCGAGTGGAGGATGATAGAGAAGGTTCAGATTTAGCCTCATCATCTTCAGCTTCATCTTTGGGTAGTGATGAAGGTTATTCAAGTTCTTATGATGAGGAGGAGGATGAAGAGGTTGGAAAGAAGAAGGAGGAGAAGGAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAACCGAGCCAAGTTATGAGTCTCAGAGCAACAAAGTTTTACACTTTGATGAGGTAATTGTGGAAACTGAAAGCTCTGGGATTTGCAAGAAGAATGGTGAGAATAAGAACATTTCATCCTCAACAGAGAATGGTGTATGTGATAACCAGCAAGATGAAACGCCAACAAAGGAGGCCAATCGTGCTAGTGTTGCCTTTGGAGAACGCAATGTGGAGGGTTGTTCTCCAAAGAAGAATGAAGGCAAAGAAAAGAAGGTAGCTAAGAAACCAGCGGTAGCGGGGAAGAGAGTGGCGAAGAGATTGGAAAGAACAGGAGAAAATGCTGGTGGTGATGTTGAAGCCGTTTGCCAAAAGAGATCACGTCCATCCACACCTAAGGAGGATGATTTAGAGAAGGATGTAAAGAAATCGGTTGAACAGAGGGGGCGCAAAATTGGGTCTGACTCTGTGGTAAAGGACAAAGGGGACTCGCCGGTGATCTATGAAATAGTGGATATTTCAGAGGAAGAGAGGGAGAAAAAGAAAGAAGGAAAGGCTAAAGGGGAGCATAAGGCACAGGTGGATTGTGAAGGTGGTTACGAAGAGAGGGAGCATATTACAGTGAAAACAAATCAATTGAGTCCAAAGGATGCAATGTTGATGGAACTTCTTGCTGAATGCTTTTGGGCTAAACATAATCCAAATGGTGTTGATCGGCAAGAAACAGTGACAAATCCACCACCAGCTCCTGAATCTCAACGGAAGTTTTATTTTGGTGAAAAAAAAGTGCCCGTTGAGAAAACGGAGTCTGAGAAAGAGTTAGATATGCTGTGGGATCAAATGGAAGCTTTGCTCAGATTAGGTGAAGTGGATTCCTTGGTTGGCTGTGTTGACATTTCTGAAGAGCAACGGAACAGCGAGATTCCAGCAATGAATTGTAAGCATAACTTCGTTCATGATGACGAGACTGGAATATATTGCATACTATGCCATTTGCTTGTCAAAGATATCAAAGGCATCACACCACCCTTTTTGAGTGAGTGTCCAAGAGATGGATCAAGAATGCGGCCACTATATGACGGGGCTAATGGCTTATGCTTCGATGATGCTGGGTTTGGTGGTGTAAGAGGAGAGTCAGAGGATGGTTGCTGTAATAAGGAAGGAACAGTTTGGGATCTGATCCCAGCAGATACTAAGGAAAGCCTGTATGAGCATCAGCAAGAAGGCTTTGAATTCCTTTGGACAAACTTGGAAGGAACCATGGAGCTTCCTAAGTTGAAGAGTCGTGATCCGAACCGGGCGGGTGGATGCATAATCTCTCATGCTCCCGGGACGGGAAAGACTCGGCTGACCATCATGTTCCTTGCAACATATTTGCAAGTGTTTCCAGATTGCTATCCAGTTATTGTTGCCCCTGCTAGCTTACTTCTAAATTGGGAAACTGAATTCAAAAAGTGGGATATTGGAATTCCTTTCCACATTTTGAGCAATGAGGATACATCAGGAAAAGAGTATTTATCTGAATGGAACAAAGTTGCAGGGTCTGCTCCATCCCTGGACGATATGCGAATCGTGAAGCTCTATTCTTGGGGCAAAGAACCAAGCATTCTTGGAATCAGTTACAATTTGTATCAGAAGCTTGCAAGCCAGGAGGACCAAGCAAAGAAAAAGAAAAAGAAGGCAAGCGTGAAGCGTGATGCAAGGTCAAAGGAGGGTCCTAGTCCTACCAGAGAAGCCATGCGAAAAACTCTGCTTGAGGTTCCTGGTTTGTTGATACTGGATGAAGGACACACTCCAAGAAATCAGACTAGTCAGATTTGGAAGGTTTTTTCCGAAATTCGGACTCAGAGAAGAATCATCCTTTCAGGGACTCCTTTCCAGAACAATTTTCTGGAGCTATACAACACAATCCGTGTGGTTAGACCGTCTTTTCCGGACACCATACCTCGGGAGCTTAAAAAGTTCTGCCAAAGAAGATTAATGCAAGAGAAGAAAGAGCGTAAAGGTTTGAGCATGGAGAATCTGAATGATGAAAACATAAAGCAGTTGAAGCAGCTTATGGATCCATTTGTCCATGTTCACAAAGGCAGTATTCTTTTGAAGACTCTTCCTGGTTTGAGAGATTGTGTGGTGACATTGATGCCGGACGAGTTGCAGAAATCACTTCTTGAGGGCATTGAAGGAAAAGAGAATACATTGACTTATGATTGCAAGTTGGCATTGTTGTCTGTTCATCCATCCCTTTTCCTTTGCCCCAGTTTTTCAGCGGAGGAAAAATCTCTTGTTGACAAGGAATACTTGGAAGAAATTAAACTTAATCCGAATGTTGGAGTCAAAACAAGATTCTTGGTGGAGTTTGTGAGAATCTGCGACGCCATGAATGAGAAAGTCCTTGTGTTCAGCCAGTTCCTTCAGCCCTTGATTTTAATCAAGATGCAATTAAAGTCAGCTTTTAATTGGATAGAGAAGAAAGAAATGTTCTTCGTAAACGGCACACTTGATACGAAAGAAAGGCAGTCACTCATTGATTCCTTTAATGATCCAAACGGCCAAGCAAAGATCATGCTTGCATCCACAAAAGCTTGTCGTGAAGGAATCAATTTGGTCGGAGCTTCGAGGGTGGTGCTGCTAGATGTCGTTTGGAACCCCTCAGTCGAAAGGCAAGCCATTAGCCGTGCTTATAGGATCGGCCAAACGAAGGTGGTCTACACTTACCATCTCATAACACATGGGACGACCGAGTACTCGAAGTACTGCCTTCAGGCCAAGAAGGACCGGTTGTCTGAACTGGTCTTTTCAGCAAGAAAAACTGAAGAGGATGAGCCCAAGAGTTCTGCCGAGGAGTTTGAGGATGAAGTTCTCGATAAGATGGTGCACCATGACAAACTGAAGGACATGTTTGGTGGCTGTTTGGTGCAGCAAAAAGAATGTGATTTAGTGGAGAATTTCGGTGAACAAGTTGTCACGGAGGAATGGGAGCAGCAATGCAAGATCACGTGGAAGTAG 3858 0.4336 MVIIKYGVASRTRSKRKENFLSSSPSIRKGSPPDFEFLGEEEVKHASEGKRKLFSHGGDSSSSGGARAMASSSSSKSRGRKRSRGGSSLRGRTKVEDDFVFLGCDDEILAESWFEPQQPLEMPPPREVIELSEDSDNNAAEKPLQNHEEFQQRNLCVKEEKIEDEERDVPPAAAAKSSGFVAVNPIIISLSDGDDEGSERNFDLEFCYSSSDSEDNDSSDDEDFRVEDDREGSDLASSSSASSLGSDEGYSSSYDEEEDEEVGKKKEEKEKEKKKKKKKKKKKKKKKKKKKRTEPSYESQSNKVLHFDEVIVETESSGICKKNGENKNISSSTENGVCDNQQDETPTKEANRASVAFGERNVEGCSPKKNEGKEKKVAKKPAVAGKRVAKRLERTGENAGGDVEAVCQKRSRPSTPKEDDLEKDVKKSVEQRGRKIGSDSVVKDKGDSPVIYEIVDISEEEREKKKEGKAKGEHKAQVDCEGGYEEREHITVKTNQLSPKDAMLMELLAECFWAKHNPNGVDRQETVTNPPPAPESQRKFYFGEKKVPVEKTESEKELDMLWDQMEALLRLGEVDSLVGCVDISEEQRNSEIPAMNCKHNFVHDDETGIYCILCHLLVKDIKGITPPFLSECPRDGSRMRPLYDGANGLCFDDAGFGGVRGESEDGCCNKEGTVWDLIPADTKESLYEHQQEGFEFLWTNLEGTMELPKLKSRDPNRAGGCIISHAPGTGKTRLTIMFLATYLQVFPDCYPVIVAPASLLLNWETEFKKWDIGIPFHILSNEDTSGKEYLSEWNKVAGSAPSLDDMRIVKLYSWGKEPSILGISYNLYQKLASQEDQAKKKKKKASVKRDARSKEGPSPTREAMRKTLLEVPGLLILDEGHTPRNQTSQIWKVFSEIRTQRRIILSGTPFQNNFLELYNTIRVVRPSFPDTIPRELKKFCQRRLMQEKKERKGLSMENLNDENIKQLKQLMDPFVHVHKGSILLKTLPGLRDCVVTLMPDELQKSLLEGIEGKENTLTYDCKLALLSVHPSLFLCPSFSAEEKSLVDKEYLEEIKLNPNVGVKTRFLVEFVRICDAMNEKVLVFSQFLQPLILIKMQLKSAFNWIEKKEMFFVNGTLDTKERQSLIDSFNDPNGQAKIMLASTKACREGINLVGASRVVLLDVVWNPSVERQAISRAYRIGQTKVVYTYHLITHGTTEYSKYCLQAKKDRLSELVFSARKTEEDEPKSSAEEFEDEVLDKMVHHDKLKDMFGGCLVQQKECDLVENFGEQVVTEEWEQQCKITWK 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120981g00005 1285 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 712 927 IPR014001 -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 130 171 - -
Stsc120981g00005 1285 Pfam SNF2-related domain 708 1005 IPR000330 GO:0005524|GO:0140658
Stsc120981g00005 1285 SMART ultradead3 682 935 IPR014001 -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 214 228 - -
Stsc120981g00005 1285 SMART helicmild6 1092 1181 IPR001650 -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 235 250 - -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 34 55 - -
Stsc120981g00005 1285 Coils Coil 262 294 - -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 56 76 - -
Stsc120981g00005 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 975 IPR027417 -
Stsc120981g00005 1285 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1066 1222 IPR001650 -
Stsc120981g00005 1285 Gene3D - 668 977 IPR038718 -
Stsc120981g00005 1285 Pfam Helicase conserved C-terminal domain 1071 1181 IPR001650 -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 838 863 - -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 411 442 - -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 130 444 - -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 364 398 - -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 456 482 - -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 270 292 - -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 1 90 - -
Stsc120981g00005 1285 MobiDBLite consensus disorder prediction 319 349 - -
Stsc120981g00005 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 873 1221 IPR027417 -
Stsc120981g00005 1285 CDD SF2_C_SNF 1060 1192 - -
Stsc120981g00005 1285 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 148 1262 IPR044567 GO:0080188
Stsc120981g00005 1285 Gene3D - 988 1262 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120981g00005 Stsc-Chr120981 56929 61584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120981g00005 1078 1232 RAD5 or RAD16-like Gene Family AT5G05130 37.821 9.26e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc120981g00005 SNF2_N 1.5e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120981g00005 K10875 - qsu:112002935 819.69