Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120981g00003 ATGGATGACCAACTCCTTGATGCAATCTGTGAACGGTTGGTGTCATCATTAAGCACAGAAGGCACATATATATTCCGAGAGGGAGATCCAGTGGACGAAATGTTGTTCATCATTCGAGGACAATTAGAGAGTTCCACAACCAATGGAGGAAGGTCTGGTTTCTACAATTCTATCACACTTAGGCCCGGCGACTTTTGCGGCGAGGAGCTCTTGACATGGGCCTTATTACCAAATTCCACCCTCAACCTGCCGAACTCTACTCGCAGTGTCAAAGCTCTCTCTGAAGTCGAGGCTTTCGCGTTGGAAGCAGAGGATCTAAAGTTCGTGGCGAGTCAATTTAAGCGCCTTCATAGCAAGAAACTCCAGCATGCATTTAGGTACTATTCCCAACAATGGAGGACATGGGCTTCATGTTTCATACAGGCTGCATGGCGAAAGCATCAGAAGAGGAAAGCAGCAAGGGAATTGTCTTTGAGGGAAGGACACTTTTATATGACACTCCCACCAGAGAGGGACAGTAGCAGCTATTATGGCGAAAGCGAAAGGGATCAAAGTGTAGGATCATCATCGTCGTCAGGGAGCATGAAAAGGGTTCAGAACCTTAACACAACCATTTTGGCTTCAAGGTTTGCAGCCAATACAAAGAAAGCCAAGGTTCGAGGCAGTGATCCTGTGCCACAGTTGTTCAAGCCTGATGAACCTGACTTCTCTGTAGATCGTGAGGAAGTTTAG 732 0.4686 MDDQLLDAICERLVSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFYNSITLRPGDFCGEELLTWALLPNSTLNLPNSTRSVKALSEVEAFALEAEDLKFVASQFKRLHSKKLQHAFRYYSQQWRTWASCFIQAAWRKHQKRKAARELSLREGHFYMTLPPERDSSSYYGESERDQSVGSSSSSGSMKRVQNLNTTILASRFAANTKKAKVRGSDPVPQLFKPDEPDFSVDREEV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120981g00003 243 CDD CAP_ED 1 128 IPR000595 -
Stsc120981g00003 243 ProSiteProfiles cAMP/cGMP binding motif profile. 1 127 IPR000595 -
Stsc120981g00003 243 Gene3D Jelly Rolls 1 115 IPR014710 -
Stsc120981g00003 243 SUPERFAMILY cAMP-binding domain-like 1 115 IPR018490 -
Stsc120981g00003 243 FunFam Cyclic nucleotide-gated ion channel 1 1 113 - -
Stsc120981g00003 243 MobiDBLite consensus disorder prediction 179 197 - -
Stsc120981g00003 243 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 236 - -
Stsc120981g00003 243 MobiDBLite consensus disorder prediction 170 197 - -
Stsc120981g00003 243 MobiDBLite consensus disorder prediction 216 243 - -
Stsc120981g00003 243 Pfam Cyclic nucleotide-binding domain 20 108 IPR000595 -
Stsc120981g00003 243 SMART cnmp_10 1 128 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120981g00003 Stsc-Chr120981 34397 35218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120981g00003 1 243 Ion Channels AT5G14870 66.795 1.17e-114 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120981g00003 K05391 - gmx:100802812 377.096