Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120981g00002 ATGCAGACATACTTGCAATCAATGTCAGTTAGACTTGAAGAATGGAGGATTAGGAAGAACGATACCGAGCAATGGATGAGACATCGACAATTGCCTCCAGATTTGCAGGAACGTGTTCGTCGTTTCGTTCAGTATAAATGGCTTGCCACCAGAGGAGTGAATGAAGAGTCCATACTACTTGATTTGCCTTTGGATCTCCGTCGTGAAATTCAACATCACTTGTGCCTTTCTCTTGTTCGACGGGTCCCTTTCTTCTCACAAATGGATGACCAACTCCTTGATGCAATCTGTGAACGGTTGGTGTCATCATTAAGCACAGAAGGCACATATATATTCCGAGAGGGAGATCCAGTGGACGAAATGTTGTTCATCATTCGAGGACAATTAGAGAGTTCCACAACCAATGGAGGAAGGTCTGGTTTCTACAATTCTATCACACTTAGGCCCGGCGACTTTTGCGGCGAGGAGCTCTTGACATGGGCCTTATTACCAAATTCCACCCTCAACCTGCCGAACTCTACTCGCAGTGTCAAAGCTCTCTCTGAAGTCGAGGCTTTCGCGTTGGAAGCAGAGGATCTAAAGTTCGTGGCGAGTCAATTTAAGCGCCTTCATAGCAAGAAACTCCAGCATGCATTTAGGTACTATTCCCAACAATGGAGGACATGGGCTTCATGTTTCATACAGGCTGCATGGCGAAAGCATCAGAAGAGGAAAGCAGCAAGGGAATTGTCTTTGAGGGAAGGACACTTTTATATGACACTCCCACCAGAGAGGGACAGTAGCAGCTATTATGGCGAAAGCGAAAGGGATCAAAGTGTAGGATCATCATCGTCGTCAGGGAGCATGAAAAGGGTTCAGAACCTTAACACAACCATTTTGGCTTCAAGGTTTGCAGCCAATACAAAGAAAGCCAAGGTTCGAGGCAGTGATCCTGTGCCACAGTTGTTCAAGCCTGATGAACCTGACTTCTCTGTAGATCGTGAGGAAGTTTAG 993 0.4612 MQTYLQSMSVRLEEWRIRKNDTEQWMRHRQLPPDLQERVRRFVQYKWLATRGVNEESILLDLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFYNSITLRPGDFCGEELLTWALLPNSTLNLPNSTRSVKALSEVEAFALEAEDLKFVASQFKRLHSKKLQHAFRYYSQQWRTWASCFIQAAWRKHQKRKAARELSLREGHFYMTLPPERDSSSYYGESERDQSVGSSSSSGSMKRVQNLNTTILASRFAANTKKAKVRGSDPVPQLFKPDEPDFSVDREEV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120981g00002 330 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 323 - -
Stsc120981g00002 330 FunFam Cyclic nucleotide-gated ion channel 1 11 75 - -
Stsc120981g00002 330 SUPERFAMILY cAMP-binding domain-like 14 209 IPR018490 -
Stsc120981g00002 330 SMART cnmp_10 84 215 IPR000595 -
Stsc120981g00002 330 CDD CAP_ED 84 215 IPR000595 -
Stsc120981g00002 330 ProSiteProfiles cAMP/cGMP binding motif profile. 84 214 IPR000595 -
Stsc120981g00002 330 Gene3D Helix hairpin bin 7 75 - -
Stsc120981g00002 330 MobiDBLite consensus disorder prediction 257 284 - -
Stsc120981g00002 330 Pfam Cyclic nucleotide-binding domain 107 195 IPR000595 -
Stsc120981g00002 330 MobiDBLite consensus disorder prediction 300 330 - -
Stsc120981g00002 330 Gene3D Jelly Rolls 82 202 IPR014710 -
Stsc120981g00002 330 MobiDBLite consensus disorder prediction 266 284 - -
Stsc120981g00002 330 FunFam Cyclic nucleotide-gated ion channel 1 82 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120981g00002 Stsc-Chr120981 33700 35218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120981g00002 1 330 Ion Channels AT5G14870 71.098 4.90e-174 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120981g00002 K05391 - gmx:100802812 540.806