Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120980g00012 ATGAAGATACATAAGAGGTATGATGCATTATTAGAGAAGATTATCTCTGATCGTGAGAATTTAAGAAGGAAGACGAAGATTGTTATGAATAAGCAGGATTATGATGAAGGTGAAGATGATAAAGTGAAGGATTTTCTTGATATTTTGCTTGATGTTTCCGAGGACAAAGATTGTGAGGTTCAATTGAGCAGAAATAATATCAAATCATTGATTCTGGATTACTTTACAGCAGCTACAGATACAACCGCAATCTCAGTGGAATGGGCAATAGCTGAACTGTTTAACAACCCAAGGGTGTTGAAGAAGGCTCGAGAGGAGGTAGCCAGAGTCACTATGAACCAAAGATTGGTGTCTGAAGATGACATTTCAAACCTTCCATACATCCATGCAATCATAAAAGAAACACTAAGACTCCATCCTCCAATAACGCTCCTTATGAGGAAGGGAATCCATGATTGTGTAGTCGGCGGTTATAAAATCCCAGCGGGCTCAGTGGTATGCATTAATATTTGGGCCATAGGCCGAGACCCAACAATATGGGAGAACCCAATGGAGTTTAGGCCCGAGAGGTTTCTTGAAGGTCAAGGAAGCACCATAGATACCAAAGGGCATCACTTCAACTTATTGCCCTTTGGTAGTGGAAGAAGGGGTTGCCCTGGCATGCCCTTGGCCATGAGACAGTTGCCTGTCATTATTGGAGCTCTTGTTCAGTGCTTTGATTGGAACATGTTTGATTCTAAAGGGAAGTTGGTGGATTATGGAACACCTATTGATATGGATGAACGGCCAGGATTAACTGTACCTAGAGCACATGATCTTCATTGCATGCTAGTTGCAAGACTCAATCCTATTCCATTCCTACAACTATAG 870 0.4161 MKIHKRYDALLEKIISDRENLRRKTKIVMNKQDYDEGEDDKVKDFLDILLDVSEDKDCEVQLSRNNIKSLILDYFTAATDTTAISVEWAIAELFNNPRVLKKAREEVARVTMNQRLVSEDDISNLPYIHAIIKETLRLHPPITLLMRKGIHDCVVGGYKIPAGSVVCINIWAIGRDPTIWENPMEFRPERFLEGQGSTIDTKGHHFNLLPFGSGRRGCPGMPLAMRQLPVIIGALVQCFDWNMFDSKGKLVDYGTPIDMDERPGLTVPRAHDLHCMLVARLNPIPFLQL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120980g00012 289 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 4 278 - -
Stsc120980g00012 289 FunFam Predicted protein 75 275 - -
Stsc120980g00012 289 PRINTS P450 superfamily signature 77 94 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 PRINTS P450 superfamily signature 218 229 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 PRINTS P450 superfamily signature 130 141 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 PRINTS P450 superfamily signature 209 218 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 Pfam Cytochrome P450 8 247 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 PRINTS E-class P450 group I signature 129 147 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 PRINTS E-class P450 group I signature 208 218 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 PRINTS E-class P450 group I signature 169 193 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 PRINTS E-class P450 group I signature 218 241 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 PRINTS E-class P450 group I signature 86 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 PRINTS E-class P450 group I signature 66 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 211 220 IPR017972 GO:0005506|GO:0016705
Stsc120980g00012 289 Gene3D Cytochrome P450 1 275 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120980g00012 289 SUPERFAMILY Cytochrome P450 2 280 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120980g00012 Stsc-Chr120980 85278 87861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120980g00012 6 280 Cytochrome P450 AT5G06900 40.364 4.68e-75 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120980g00012 K23179 K24188 gmx:100783503 445.277