Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120980g00002 ATGTGGGGTTTCAGAGAACTTGGTTTCTTTATATGTGCCTTAGCCTTATCAATCTTGCCCTTGTTTTGTTTCTCTGCAAAGTTTGTGCCTATAGATAACTACCTTATAGATTGTGGATCACCTTCCAATACTACAGTAGGTAGTCGAAATTTCGCAGCAGATAACTTCTTTAAGAATTTGGTTTCCACCAATCAAGATATTCTTGCCAATACCTCGAATTCCAATGGCGATTCGCCTCTATATAGGACTGCGAGGATTTTCGCCGGATCCTCCAAGTACACATTCCCTATTAACCAAAAGGGGAGACATTGGATTAGGCTTTATTTCTTTCCATTTGATTTTGGAAAGTACAAATTGAGTGCTGCGAATTTCGCTGTCACCGGGCAAGATACTATACTTCTTAGTAACTTCAGTGTGCAGAAGAATCCTGTTATGAAGGAGTTCTCATTGAATGTGAGCTCGGACACCCTCGTGATCACTTTGGCGCCATCAAACAACTCAATTGCCTTTGTGAATGCCATTGAAGTTGTTTCGGTTCCAGATGAGCTCATTGTTGATGATGCTTACACTTTAAAACTATCATCATCATCTTACTCCGGGTTGTTTTCTCAGGCATTGGAGACTGTATACAGGGTTAACATGGGTGGTCCTAAGGTCTCGGCCAACAATGACACTCTTCAACGAACTTGGATTCCGGATCAAAACTTCCTTATAAACTCCAACCTTGCAACTAGTAACTCAAACATTGCCGCTGTTAAATACAGGGAAGGTGGGCCAACTGAAAACATAGCTCCACCTGTTGTCTATGGTACTCTTAGACAGATGAATTCGGCTGATGACCCCCGATTTATCTTCAATGTGACATGGCAGTTTGATGTGGATCCTGGATTTCAGTACCTTGTTAGGCTTCACTTCTGTGATGTAATTAGTAGAAGTCTTGATGAACTCTACTTCAATGTTTACATTGACTCTTCTTATGCTGCCAAGGATCTTGATCTAAGTACAGAAAATAATAATGTTTTGGCTGCTCCATATTTTAAGGATTTGGTTACTCCCCCAACTGTTGGCAACCGAATTCGTGTGAGTATCGGTCCGTCTCCGACGAATACTGACTATCCTAATGCCATATTGAATGGGCTGGAGATCATGAAAATGAACAACACTATGAACAGTCTTAGTACAGCTACAACTGTGCCTGTGACGAATGCTTCCGGTTCGAACTCTAAGAAAGTTGGGGTGATAGTCGGTTCGATTCTCGGGGCCTGTAGTGTGATTGTCTTGATTGGAGTATTGTTTGTACTGTACAGGAAAAGGAGGAAGTTGGTGCAGCAAAGGGATTCAAAGACATGGGTTCCAATATCTGTCAATGATGGAACTTCTCACACCATGGGAAGTAAATATTCTAATGGCACAATAGCGAGTGCAGCTTCGAATTGCGGCTACCGCATCCCTTTCTTGGCAGTTCAAGAGGCTACTAACAACTTTGATGAGAATTTGGTTATCGGAATAGGAGGTTTCGGTAAAGTATACAAGGGAGAGTTGAATGATGGAACTAAAGTAGCAGTTAAGAGGGGGAATCCTCGGTCCCAGCAGGGGCTCGCGGAGTTCAGGACTGAAATCGAAATGCTGTCTCAGTTCCGGCATCGCCATTTGGTGTCACTGATTGGATATTGTGATGAGAGGAATGAAATGATCTTGATATATGAATATATGGAGAAGGGAACTCTTAAGAGTCATTTGTATGGTTCCGGTCTTCCAAGCTTGAGTTGGAAGGAGAGGCTTGAGATATGCATAGGAGCTGCTAGAGGACTTCATTACCTTCACACCGGCTATGCTAAGGCAGTAATTCACCGCGATGTGAAGTCTGCAAATATCCTGCTTGATGAGAACCTTATGGCGAAAGTTGCTGATTTCGGGCTATCGAAAACTGGTCCTGAAATTGACCAGACTCATGTGAGCACAGCTGTCAAAGGGAGCTTTGGGTACCTTGATCCGGAGTATTTTCGAAGGCAACAATTAACAGAAAAGTCAGATGTGGAAATGGTGAACTTGGCAGAATGGGCAATGAAGTGGCAGAAGAAAGGACAGTTGGAGCAGATCATTGATCCAACACTGGCTGGGAAAATAAGGCCGGATTCTCTAAGGAAGTTCGGCGAAACAGCCGAAAAATGCTTAGCCGAATTCGGTGTTGATAGGCCTTCTATGGGAGATGTCTTGTGGAATCTAGAGTATGCTCTCCAACTTCAGGAGGCTGTTTTACAAGGTGATCCTGAAGAAAATAGCACCAACATGATCGGCGATCTGTCTCCGCAGATCAACAATTTCGACCGCGACGAAAGTGTTTCGGCAGCCCAATTTGAAGAATCTCCAAGCCTTGATGATCTTTCAGGTGTTTCTATGAGTAAGGTGTTCTCACAGTTGGTGAAATCTGAAGGGAGGTGA 2442 0.4337 MWGFRELGFFICALALSILPLFCFSAKFVPIDNYLIDCGSPSNTTVGSRNFAADNFFKNLVSTNQDILANTSNSNGDSPLYRTARIFAGSSKYTFPINQKGRHWIRLYFFPFDFGKYKLSAANFAVTGQDTILLSNFSVQKNPVMKEFSLNVSSDTLVITLAPSNNSIAFVNAIEVVSVPDELIVDDAYTLKLSSSSYSGLFSQALETVYRVNMGGPKVSANNDTLQRTWIPDQNFLINSNLATSNSNIAAVKYREGGPTENIAPPVVYGTLRQMNSADDPRFIFNVTWQFDVDPGFQYLVRLHFCDVISRSLDELYFNVYIDSSYAAKDLDLSTENNNVLAAPYFKDLVTPPTVGNRIRVSIGPSPTNTDYPNAILNGLEIMKMNNTMNSLSTATTVPVTNASGSNSKKVGVIVGSILGACSVIVLIGVLFVLYRKRRKLVQQRDSKTWVPISVNDGTSHTMGSKYSNGTIASAASNCGYRIPFLAVQEATNNFDENLVIGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEKGTLKSHLYGSGLPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVEMVNLAEWAMKWQKKGQLEQIIDPTLAGKIRPDSLRKFGETAEKCLAEFGVDRPSMGDVLWNLEYALQLQEAVLQGDPEENSTNMIGDLSPQINNFDRDESVSAAQFEESPSLDDLSGVSMSKVFSQLVKSEGR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120980g00002 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Stsc120980g00002 813 Pfam Malectin-like domain 36 385 IPR024788 -
Stsc120980g00002 813 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Stsc120980g00002 813 Gene3D Phosphorylase Kinase; domain 1 458 570 - -
Stsc120980g00002 813 PANTHER OS03G0124300 PROTEIN-RELATED 10 449 IPR046957 GO:0004672
Stsc120980g00002 813 FunFam Putative receptor-like protein kinase 33 180 - -
Stsc120980g00002 813 ProSiteProfiles Protein kinase domain profile. 495 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120980g00002 813 FunFam receptor-like protein kinase FERONIA 459 570 - -
Stsc120980g00002 813 SUPERFAMILY Protein kinase-like (PK-like) 475 743 IPR011009 -
Stsc120980g00002 813 Gene3D Transferase(Phosphotransferase) domain 1 571 765 - -
Stsc120980g00002 813 FunFam Receptor-like protein kinase FERONIA 205 387 - -
Stsc120980g00002 813 SMART serkin_6 495 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120980g00002 813 Gene3D - 33 179 - -
Stsc120980g00002 813 Gene3D - 204 387 - -
Stsc120980g00002 813 CDD STKc_IRAK 501 743 - -
Stsc120980g00002 813 Pfam Protein tyrosine and serine/threonine kinase 500 679 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120980g00002 Stsc-Chr120980 12821 15299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120980g00002 3 813 Receptor kinase-like Gene Family AT3G46290 63.496 0.0 1055
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc120980g00002 Malectin_like 1.3e-39 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120980g00002 - - gmx:100806488 1279.23