Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120980g00001 ATGCATTCGTCGTCTTCAAGCGGCGGAGCATCATCTCATCAAATGAAAATAATCAACTCACCAGAGAATCGTTATCAATGGCAATTATTCATGACGGTGAACTCAGAAGCAACAAGTATGAACAGCAGCAGCGGTTGTAGCACGCCGACTTCTTTGGCGAGTTGTGAGACTATGAGTCAGCCAATGAGCAACACGACATTGCAGAAGAGCATGAGTAGCCAATCCCTGATTAGGACCGGTGGGGTTCACCAAAACCATAAGCAGTTATATCCTTTCTTTGCTTTATTCTCTGAGTTACTTAATTCTGATGACGTTCCCGTCCCCGTTCGTAGGGTTTACAGCACCGGTGATCTTCAGGAAGAAAGTTCACTCTCAAGTGAAAGTAATATGATCATAGAAGCAATGAGCAGAGCCAGTCCATATAGCCCTGAGGAGAAAAAGATGAGGATTGAGAGATATAGAACCAAAAGAAACCAGAGGAACTTCAACAAGAAAATCAAGTATGCTTGTAGGAAAACATTGGCGGATAGCAGGCCAAGAATCCGAGGAAGATTTGCAAGGAATGATGAGATTGCGAGAAACCCTCCATCACTTGAATGGTGTCAATTTGGTGCTGCTAATAATCGGGAGGAACAAGATGAAGAAGATGAGAATTGGGCCAATATATTTGATATCTTAGACCCTGCAAATCTTCCTGCTCATCATCATCATCAAGAGCAGCAACAAGATAATTCCCCTTTTGGTGTATTCTACTCTAATATTTGA 765 0.4248 MHSSSSSGGASSHQMKIINSPENRYQWQLFMTVNSEATSMNSSSGCSTPTSLASCETMSQPMSNTTLQKSMSSQSLIRTGGVHQNHKQLYPFFALFSELLNSDDVPVPVRRVYSTGDLQEESSLSSESNMIIEAMSRASPYSPEEKKMRIERYRTKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIARNPPSLEWCQFGAANNREEQDEEDENWANIFDILDPANLPAHHHHQEQQQDNSPFGVFYSNI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120980g00001 254 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Stsc120980g00001 254 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 27 217 IPR045281 GO:0009909
Stsc120980g00001 254 Pfam CCT motif 148 188 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120980g00001 Stsc-Chr120980 6664 8612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120980g00001 137 187 C2C2-CO-like Transcription Factor Family AT5G24930 52.941 1.82e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc120980g00001 CCT 1.1e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120980g00001 - - aprc:113859774 219.55