Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120979g00013 ATGGTTTCTTTATCAACAAACCCCTTCTTTTCCCTAACCACCACCCAAAACGCTGCGTCGAGATTCGCGCCTTCAACCAAGTTCAATTCTTCTTTCAACACCAACAATAATAAAGATCATAGGAAGGTTGTTTGTGCTTGCGTCGCTCCTCCAACAAATTTCAAGAGCGAAGACTCTTCCGCCCTCAGATTCAATGGTTCATCGAAATCGGAGCAATTGAGCACACTGCGGGAACAAGAGGCTGACTCTGATGTTCTTATTGAGTGTAGAGACGTATACAAGTCATTTGGGGAAAAGAAAATCCTCAATGGTGTTAGCTTCAAGATTAGACATGGGGAAGCAGTTGGAATAATTGGTCCATCTGGGACTGGAAAATCTACAGTCTTAAAGATTATTGCTGGATTACTTGTTCCAGATAAGGGTGAGGTTTATATTCGAGGTAGAAAGAGAGTTGGTCTAGTAAGCGATGATGAGCTACATGGTCTTCGCATTGGATTAGTGTTCCAAAGTGCAGCACTTTTTGATTCTTTGACTGTCCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAACCATGCCTGAGGACCAGATATCAGAGGTCGTCAAGGAAACGTTGGCTGCTGTCGGATTGAAGGGAGTTGAGAATCGGTTGCCTTCTGAGTTATCAGGTGGAATGAAAAAACGAGTTGCTTTAGCTCGATCTATCATTTATGACAACACCAAGGATTCAATTGAGCCCGAGGTTCTCTTATATGATGAACCAACTGCTGGACTAGATCCCATTGCATCTACTGTTGTTGAGGATCTAATTCGTTCAGTGCACATAAAAGGACAAGATGCACGTGGGAAACCCGGGAACATTGCATCGTATGTGGTTGTCACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGGTTGTTGTTTCTACACAAGGGAAAGGTTGTTTGGGAAGGAATGACTCATGAATTTACAACATCAACAAATCCAATTGTTCAGCAGTTTGCATCTGGGAGCCTGGAGGGTCCTATCAAATACTAG 1044 0.4262 MVSLSTNPFFSLTTTQNAASRFAPSTKFNSSFNTNNNKDHRKVVCACVAPPTNFKSEDSSALRFNGSSKSEQLSTLREQEADSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLVPDKGEVYIRGRKRVGLVSDDELHGLRIGLVFQSAALFDSLTVRENVGFLLYEHSTMPEDQISEVVKETLAAVGLKGVENRLPSELSGGMKKRVALARSIIYDNTKDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGQDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGKVVWEGMTHEFTTSTNPIVQQFASGSLEGPIKY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120979g00013 347 SMART AAA_5 111 315 IPR003593 GO:0016887
Stsc120979g00013 347 ProSitePatterns ABC transporters family signature. 222 236 IPR017871 GO:0005524|GO:0016887
Stsc120979g00013 347 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 16 347 - -
Stsc120979g00013 347 Pfam ABC transporter 102 257 IPR003439 GO:0005524
Stsc120979g00013 347 CDD ABC_Org_Solvent_Resistant 87 336 - -
Stsc120979g00013 347 Gene3D - 73 340 IPR027417 -
Stsc120979g00013 347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 328 IPR027417 -
Stsc120979g00013 347 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 87 338 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120979g00013 Stsc-Chr120979 60690 64600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120979g00013 93 331 Calmodulin-binding Proteins AT2G36910 29.200 5.65e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120979g00013 - - gmx:100783283 574.704