Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120979g00003 ATGTTGGGCAGCAAAGTGTTCCTAACCTACAAAAGAAAGCGACAAGCGTCTTTTGGAGATGCTCATAATTGTTCTTTATCTACACAAGATAAACATGACACGCAAACTGATAAGGCAACGGAAAAGAATGAAGAGAAACAAATGCGAGGTTTTTCATCATGGCTTCCGATTCGCAAACCTGACAGCCTTGAGTTCGGAGAGCAAGGAAATTGTGATGCAGAAGAAGTAATAGTTACTACGGATAAATCATTTTCATCAAGGCATCAATGTGAGGATACCTCGGAGACGGCGAGGGGTGCTGGTGAATTACTTGCTGTACAAGCAGAAAAGGCTTCAACCAATGATTGCGGTCCTCACGGAAATTCCTGTGCCACTGAAATCTCCAATAATGAATTGAGCAATTGTCCAAATATACAATGCACTTCCCCATTGGTTGAATTAGATGCCGGGAATGGTTCGAATTTAGTCGGCTCAGAGGCATGCATTACAAGGGAATGCAGCTCTCCAAAAGGCAATGAATCTCCTGTATCGAATAAGTCAAGAATAGAAGAGTTTACTGATTCGCAGTTAAAAGATGGTTTCAGTAACCCATCTCGACGAAAGGTTATAAAGACCAAGTTGAGCACTCCATTAATCACCTTCAATCGATGCTATAAAAGAAAAAGAGATTCAGATGCAATTGGTGGACAAAGCGAATTATTGCACAGGAAGGAAAACATTTCAGCACTAGCCAAGTGGAGCATGCTTGTTGATGTTAATGCCAGTGCTAGTTCTACCGATGAATCATCTTGTGAGGAATGTCCTGTAGATAAAGTGCCAGACCTTAATCAATCAGTCGATCATCTGGCTGACCTTAATCAATCAGCTGAGCTTTCAGAGAGAGGGGAGCTTAATCAAGATAGAGAAAAAGTAGAAAATGCACACCATCCGGACACTTCTGGAGTTGTTTCGGCAACATGTGTGACACTCTTAGGGGAGCAACTGCATGATGGGGATGACATAGACAAAACCGGTACTATAGCAACAGAACCAAGTCAGAGTTGTTTGATTCAAAAGGATGCTGAACATATGCATAAGGATTGCGAAGGAGTTTGTATCAATGTTACCACAACTGCTGATCAGGATCCAGAGTCTGAGCCTTCTGTAAGAGATGCCATGGAAAATGGAGCACTCCACCTGCTTGTTGACTCTGCAGATGAAAACATAGTTGATTTGAACTTGGGTGTTGGCAAGCATCCCATAGATTCGAGAATGACAACTCCTGCGGACAAATTGGCCTCTATAAGCAGCAGTTCTGCGACTGTGGAAGATCAAATTTCTCCATTGGAATTGTTAAATGTCAAAGATACACAGATGATTCCAGAAGGAACATCCAATGATCAACCTGAGTCAGCTGGTAGCATGATGTCTAGCAAAAGAATGAATGTTCAACAAACTGAAACTATTCCATCAGAACTTGTGCCAACTGTTTCTCTTTCTTTGGGTTTGTCTTTACCCGTTGAGCCTAACATTGGAGGCTGTGATTCCATTACTTGCTTGTCATTATTGCCTTTTCGTGAAGCCAGAGGTGCCGCACAAGACAGGTTATATCAATCGTCAGGAAGCCGAAAACCATTGCATCGCAGACACAAAATGATGCTTGACAGCATTGTAAGCAGAGCAAGATCATTGAATGAGAGGGGCATTTTTCAAGATAACTTGATGCCACACCCAACCATGTGGTCTGAAGAGGAGCTGGATTATCTCTGGATCGGTGTGAGGAGACATGGTAAGGGGAACTGGGATGCCATGCTAAGGGATCCGAGGCTGCGGTTTTCACCGTTAAGGTCAGCAAAGGACCTTGCTGATCGTTGGGAGGATGAACAACTAAAAGTTTTGAATGATGTTGCTTTTCCGCAGTTCATGTATCCGAGAGCTGGAATGGCATCATTGGAAGGAAGCTACTGCTTAGATCCTAAAGCAAGTTATTGCAGAGAAAGTGCAATAGACAATACTAAGCTTTTGCCGGAAGATATGTTTTCTTACAGGGAGAATTATAGCTTAAAGAAATCTCGTGCTCGGTTAAATTCTCACGGTAACACCACCGGACGGAGTCATAGGCCGGGATTTCATTCTAGGAGGGCCTCTTACAACAAAAGTGCTGATAGTTATGAATGGGGATCTTTTCCAGGAAGCTTGAGTGTTCCCAGAGAATATTCTTATTCAAATGATTTTCCCTTAAACTTTTCGACAGGAAACAGTAATTTGCCTCACTGGCTGAGAGAAGCAATTTTTGCTCCTCCTTTAAATCCGGTCGAGCCGAATCTGGCTCTGTCCACAGCCATTCCTTTGAGTTCTCATCCGGACCATGGCTTGGATGCCGGCAAGTCTAGCTTTGTGCCTCAAAATAGGTTGAGTGGTTCAGGGCCAACTGAGCCGCAAATGTCAAATCAAAATGGCCCTTCTCACTGTTCAACCTATTCAAGAAGAAGATTTGGGATGATGAAAGTGAGCAAGTCATTGGAGCAACATGTCAAGAAACCAGAAGAGGCCTTGATAATTATTGATAGTGACACATCTTCTGAAGAGACCATATCTGATGATAACCGTTCCAGCTTATAA 2601 0.4295 MLGSKVFLTYKRKRQASFGDAHNCSLSTQDKHDTQTDKATEKNEEKQMRGFSSWLPIRKPDSLEFGEQGNCDAEEVIVTTDKSFSSRHQCEDTSETARGAGELLAVQAEKASTNDCGPHGNSCATEISNNELSNCPNIQCTSPLVELDAGNGSNLVGSEACITRECSSPKGNESPVSNKSRIEEFTDSQLKDGFSNPSRRKVIKTKLSTPLITFNRCYKRKRDSDAIGGQSELLHRKENISALAKWSMLVDVNASASSTDESSCEECPVDKVPDLNQSVDHLADLNQSAELSERGELNQDREKVENAHHPDTSGVVSATCVTLLGEQLHDGDDIDKTGTIATEPSQSCLIQKDAEHMHKDCEGVCINVTTTADQDPESEPSVRDAMENGALHLLVDSADENIVDLNLGVGKHPIDSRMTTPADKLASISSSSATVEDQISPLELLNVKDTQMIPEGTSNDQPESAGSMMSSKRMNVQQTETIPSELVPTVSLSLGLSLPVEPNIGGCDSITCLSLLPFREARGAAQDRLYQSSGSRKPLHRRHKMMLDSIVSRARSLNERGIFQDNLMPHPTMWSEEELDYLWIGVRRHGKGNWDAMLRDPRLRFSPLRSAKDLADRWEDEQLKVLNDVAFPQFMYPRAGMASLEGSYCLDPKASYCRESAIDNTKLLPEDMFSYRENYSLKKSRARLNSHGNTTGRSHRPGFHSRRASYNKSADSYEWGSFPGSLSVPREYSYSNDFPLNFSTGNSNLPHWLREAIFAPPLNPVEPNLALSTAIPLSSHPDHGLDAGKSSFVPQNRLSGSGPTEPQMSNQNGPSHCSTYSRRRFGMMKVSKSLEQHVKKPEEALIIIDSDTSSEETISDDNRSSL 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120979g00003 866 MobiDBLite consensus disorder prediction 687 707 - -
Stsc120979g00003 866 MobiDBLite consensus disorder prediction 294 309 - -
Stsc120979g00003 866 MobiDBLite consensus disorder prediction 780 818 - -
Stsc120979g00003 866 MobiDBLite consensus disorder prediction 847 866 - -
Stsc120979g00003 866 MobiDBLite consensus disorder prediction 792 818 - -
Stsc120979g00003 866 MobiDBLite consensus disorder prediction 288 312 - -
Stsc120979g00003 866 Gene3D - 572 622 - -
Stsc120979g00003 866 ProSiteProfiles Myb-like domain profile. 574 622 IPR001005 -
Stsc120979g00003 866 MobiDBLite consensus disorder prediction 21 50 - -
Stsc120979g00003 866 SUPERFAMILY Homeodomain-like 571 619 IPR009057 -
Stsc120979g00003 866 CDD SANT_TRF 573 618 - -
Stsc120979g00003 866 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120979g00003 Stsc-Chr120979 9127 13038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120979g00003 574 620 Single Myb Histone (SMH) Gene Family AT1G17520 46.939 6.57e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120979g00003 - - tpra:123888194 780.785