Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120979g00002 ATGGAGCTTCACTACCTTAACATTGTCTTCATAATCTTCATTCTTCTATCTCTATTTCCTCAAAATCTCTATTGCCAACAACAATTCCTCAATGAAACTGTCTTTGACTGCTCCAGCAACCCTTCCACACCAAAAGGGTACCTCTGTAATAGCCCTAAGAAATCATGCACTTCATTCTTAGTTTTCAGGTCCAAACCTCCCTATAACACCCCTCAAACCATTGCATATCTTCTTGGTTCTGAAGAATCTACAATATCCTCAATCAACAAAATTTCAAGTAACAACAAAATTCCCACCAACAAATCAATCATTGTTCCTGTGTCTTGCTCTTGTTCCGGAAATATTTATCAGCACGACGCTCTTTACACTGTCAATAAGGATGACACATATTTCATGTTGGTGAACTCTACTTACCAAGGCCTAACAACATGCCAGGCTTTGATGGGACAGAACTACTATGCTTCTGCCAACATTGCCATTGGTGCACAGCTCACAGTTCCTATGCTATGTGCTTGTCCAACCTCAAACCAAACAGCAAACAGCGTGACATCATTGCTCGTTTACTCGCTTGGCGAAGGCGATACGGTTAAGTCTATAGGAGAGCAGTATGGTGTTGATGAACAAAGTATTCTTGATGCCAATGAACTGAACCAGACATCAAATGAAAACAGAAGCTTGAACCTTATGGCAAGGACACCGATTTTGGTTCCATTGAGGGGTAAGAGCTGCAAAAATGATCCAGAGAGTTTCTATTGTACATGTTCTCAGGGAGTTACTACAAATTCAAGCCTCATAGGAGTTAACTGTGAAGAATCAGATGGTCAAAAATTTCCTGCCAAATTGGTTGCTGCACTAGGTGTTGGCATTGGTGCTGCCTTTCTCTTTTTGTTTCTTCTTGGTTATAAGTTATACCAATGCATACATAATAAGAGGAAAAAGCTTCATAAAGAAAAGCTGTTCAAGCAAAATGGTGGCTACTTGCTACAAGAGAAAGTCTCATCTTATGCAAATGGACAAAGGACAAAGCTTTTTACCGAGGAGGAGCTGAAGAGAGCAACAGATAACTACAACCAGAGTAGGTTCCTCGGTCAAGGCGGCTTTGGCGAAGTCTACAAAGGAATGTTGCCGGACGGAACCATAGTAGCGGTTAAGCGATCAAAAGAGATGGAAAGGAACCAGATACAGACTTTTGTCAACGAAGTTGTGATTCTATCTCAAATTAACCACAGGAACATTGTGAAGCTCTTGGGGTGTTGTCTTGAGACAAAAGCACCATTACTAGTGTATGAATTCATTCCAAATGGAACACTTTCTGACCATATTCATGTGAAAGAGGATGATTCATCATCGCTTTCATGGGACGGCCGCCTTCGAATTGCTTGTGAGGTAGCCGGAGCAGTGGCCTATATGCATTCAGCAGCTTCTGTTCCTATCTTCCATAGAGACATCAAACCTTCAAACATACTCCTTGACAGCAACTACAGTGCTAAAGTTTCTGATTTCGGAACATCAAAATCACTTCCATTGGATAATACTCACTTGACAACTGCAGTAAGAGGAACTTTCGGGTACATAGATCCCGAGTATTTTCAGTCCAATCAATATACAGATAGAAGTGATGTGTATAGCTTCGGAGTTGTGCTCGTTGAGCTCATAACCGGGAGGAAACCACTTTCATTGTTAGAAGATGAGGGTCAGAATCTGATAGCAGAATTCATTTCTTTGATGAAGGAGAACCAGCTTTCCAAAATTCTGGATGCCAAAGTGCTTAAGGAAGCAAAGGAAGATCACATTCCTGCCATTGCAAATCTTGCAATGAGATGCTTGAGACTCAGTGGGAAGAAACGACCAACCATGAAAGAAGTTTCAGCAGAGTTAGAAGCATTGAGAACAGTACAGAGTTCCTTACTTATCGACCTTGACCGAACCGCGCCGAACGATGGTGGATCACTCAACCACACCACCAGGGGATCAATTCAAGAACCTGGAGAGGAAAGCATTTGGCTATCCCTACAAATGGAATCCACATCATTCTAA 2037 0.4173 MELHYLNIVFIIFILLSLFPQNLYCQQQFLNETVFDCSSNPSTPKGYLCNSPKKSCTSFLVFRSKPPYNTPQTIAYLLGSEESTISSINKISSNNKIPTNKSIIVPVSCSCSGNIYQHDALYTVNKDDTYFMLVNSTYQGLTTCQALMGQNYYASANIAIGAQLTVPMLCACPTSNQTANSVTSLLVYSLGEGDTVKSIGEQYGVDEQSILDANELNQTSNENRSLNLMARTPILVPLRGKSCKNDPESFYCTCSQGVTTNSSLIGVNCEESDGQKFPAKLVAALGVGIGAAFLFLFLLGYKLYQCIHNKRKKLHKEKLFKQNGGYLLQEKVSSYANGQRTKLFTEEELKRATDNYNQSRFLGQGGFGEVYKGMLPDGTIVAVKRSKEMERNQIQTFVNEVVILSQINHRNIVKLLGCCLETKAPLLVYEFIPNGTLSDHIHVKEDDSSSLSWDGRLRIACEVAGAVAYMHSAASVPIFHRDIKPSNILLDSNYSAKVSDFGTSKSLPLDNTHLTTAVRGTFGYIDPEYFQSNQYTDRSDVYSFGVVLVELITGRKPLSLLEDEGQNLIAEFISLMKENQLSKILDAKVLKEAKEDHIPAIANLAMRCLRLSGKKRPTMKEVSAELEALRTVQSSLLIDLDRTAPNDGGSLNHTTRGSIQEPGEESIWLSLQMESTSF 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120979g00002 678 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 112 630 IPR045274 GO:0007166
Stsc120979g00002 678 CDD STKc_IRAK 362 629 - -
Stsc120979g00002 678 FunFam Wall-associated receptor kinase 2 327 431 - -
Stsc120979g00002 678 Pfam Protein kinase domain 356 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120979g00002 678 SMART serkin_6 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120979g00002 678 Gene3D Transferase(Phosphotransferase) domain 1 432 637 - -
Stsc120979g00002 678 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Stsc120979g00002 678 SUPERFAMILY Protein kinase-like (PK-like) 342 638 IPR011009 -
Stsc120979g00002 678 Gene3D Phosphorylase Kinase; domain 1 328 431 - -
Stsc120979g00002 678 FunFam Wall-associated receptor kinase 2 432 646 - -
Stsc120979g00002 678 ProSiteProfiles Protein kinase domain profile. 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120979g00002 678 ProSiteProfiles LysM domain profile. 186 236 IPR018392 -
Stsc120979g00002 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Stsc120979g00002 678 Pfam LysM domain 191 219 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120979g00002 Stsc-Chr120979 6774 9085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120979g00002 252 630 Receptor kinase-like Gene Family AT1G69730 51.365 8.49e-133 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc120979g00002 Pkinase 3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120979g00002 - - gmx:100795455 905.975