Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120979g00001 ATGGTGTTCAGATCCAAACACCCTTATGACAACCCTGTAAGCATTGCATACCTTCTTTCCTCTGAAGCATCAATCATAGCCTCAATCAACAAGCTCCCAAACAATGCCACCAGCTTCCCTTCAAACACACCCATCATTGTTCCTGTCTTTTGTTCATGCCATGGGAATATCTATAGCCATTATGCTCCTTACACTGTCAAGAACAATGACACATACTATGAATTGGTGAAAACAACTTATCAAGGACTAACAACATGCCAAGCATTGATGGGGCAGAACTACTATCCCCCAAATGGACTTCCAATTGGTGCTGAACTCACAGTTCCTGTGTTATGTGCTTGTCCAACAGAAAACCAAACTAAAACAGGTGTCACTTCCTTATTGGTTGATTTGATTAACTATGGTGACACCTTGAAGTCCATAGGAGAGGGTTATGGTGTTGATGAACAAAGTATGTTAGAGGCTAATAAGCCACAGAGTGAAAATAGTAGCAGCTTCAGCCTCATGGCCTTCACACCTATCTTGGTTCCTCTAAGTGGAAAGAGTTGCAAAGAGGATCCAAATAGTTTCTATTGTAACTGTTCTAAGGGATTTCTTCCTGATGGAAGCTTAAAGGGGATTTACTGTGATGAGTCTCATGGTCAAAACTTTCCTGCTAAATTGGTTCTTTCAATTGGTGTTGGCATTGGTGTAGGCTTTCTTTGTTTCTTTCTTTTGGGTTATAAACTATACCAATACATACAGAAAAAGAGGGAAAGGATTCACAAGGAAAAGCTGTTCAAACAGAATGGTGGCCACTTGTTACAAGAGAAAGTATCATCATCACATGGAAATGGATCACAGAAGATAATAAAACTTTTCACAGCTGAGGAGCTTCAAAGGGCAACAGATAACTACAACTGGAGCAGGTTTCTTGGTCAAGGTGGATATGGAAAAGTCTACAAAGGAATGCTACCAGATGGAACCATAGTAGCTGTGAAGAGATCTAAAGAGATTGAGAGGAACCAGATTGAGACTTTTGTCAATGAAGTTGTCATTTTATCACAGATTAATCACAGGAACATTGTGAAGCTCTTGGGGTGTTGTCTTGAGACAGAAGCACCATTACTAGTGTATGAGTTCATTCCAAATGGAACACTTGCACAACATATACACAGCAAAGACCATGAATCATGTCCACCACTCTCATGGGATTGCAGGCTTCGAATCGCGTGTGAGGTAGCCGGAGCAGTGGCCTATATGCATTCTTCAGCTTCAATTCCCATCTTCCATAGAGATATCAAACCTACTAACATACTCTTAGATAGTAACTATGGTGCAAAAGTGTCTGATTTTGGAACCTCAAGATCATTGCCACATGACAAGACTCACTTAACAACAGCAATAGGAGGAACTTTCGGATACATAGACCCTGAATATTTCCAATCTAGTCAATTTTCGGATAAGAGTGACGTGTATAGTTTCGGAGTTGTGCTTGTTGAGATCATAACCGGGAAGAAGCCGATTTCGTTCATGGAAGAAGATGAGGGTCAGAATTTGATTGGTGAATTCATTTCTGCTATGAAGGAGGACAAAGTTTGTGATATCTTGGATCCCAAGGTATTGAAGGAAGCTAAGAAGGATGAGGTTGTTGCAATTTCAAAACTTGCAATGAGGTGTCTGAGGCTAAATGGGAAGAAAAGGCCAACAATGAAAGAGGTTTCAGCTGAGTTGGAATCTTTGAGGAAGGTACAAAGTTCCATGTTGGTTAATAACCATGATCATCATGATCATGATGAAAAATTGTTGCATAAACACAACAATAGTGTAGTACAAGAATATGAAGAGGAGAGCATTTTGATGTCATTACAGTTACAAATGGAGTCCCCATCCTTCTAA 1878 0.401 MVFRSKHPYDNPVSIAYLLSSEASIIASINKLPNNATSFPSNTPIIVPVFCSCHGNIYSHYAPYTVKNNDTYYELVKTTYQGLTTCQALMGQNYYPPNGLPIGAELTVPVLCACPTENQTKTGVTSLLVDLINYGDTLKSIGEGYGVDEQSMLEANKPQSENSSSFSLMAFTPILVPLSGKSCKEDPNSFYCNCSKGFLPDGSLKGIYCDESHGQNFPAKLVLSIGVGIGVGFLCFFLLGYKLYQYIQKKRERIHKEKLFKQNGGHLLQEKVSSSHGNGSQKIIKLFTAEELQRATDNYNWSRFLGQGGYGKVYKGMLPDGTIVAVKRSKEIERNQIETFVNEVVILSQINHRNIVKLLGCCLETEAPLLVYEFIPNGTLAQHIHSKDHESCPPLSWDCRLRIACEVAGAVAYMHSSASIPIFHRDIKPTNILLDSNYGAKVSDFGTSRSLPHDKTHLTTAIGGTFGYIDPEYFQSSQFSDKSDVYSFGVVLVEIITGKKPISFMEEDEGQNLIGEFISAMKEDKVCDILDPKVLKEAKKDEVVAISKLAMRCLRLNGKKRPTMKEVSAELESLRKVQSSMLVNNHDHHDHDEKLLHKHNNSVVQEYEEESILMSLQLQMESPSF 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120979g00001 625 ProSiteProfiles Protein kinase domain profile. 299 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120979g00001 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Stsc120979g00001 625 SMART serkin_6 299 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120979g00001 625 FunFam Wall-associated receptor kinase 2 267 374 - -
Stsc120979g00001 625 FunFam Wall-associated receptor kinase 2 375 594 - -
Stsc120979g00001 625 Pfam LysM domain 134 162 IPR018392 -
Stsc120979g00001 625 CDD STKc_IRAK 305 574 - -
Stsc120979g00001 625 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 117 585 IPR045274 GO:0007166
Stsc120979g00001 625 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Stsc120979g00001 625 Pfam Protein kinase domain 301 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120979g00001 625 Gene3D Phosphorylase Kinase; domain 1 264 374 - -
Stsc120979g00001 625 Gene3D Transferase(Phosphotransferase) domain 1 375 601 - -
Stsc120979g00001 625 SUPERFAMILY Protein kinase-like (PK-like) 278 571 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120979g00001 Stsc-Chr120979 3200 6188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120979g00001 183 575 Receptor kinase-like Gene Family AT1G69730 53.944 6.13e-140 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc120979g00001 Pkinase 6.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120979g00001 - - gmx:100792803 887.871