Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120977g00012 GTGTTTCGTGATTCAACTCTCAAAGCTCCACTTTGGGAAGAAGTTTCAAGGAAACTAGGAGATCTTGGATACAAGAGAAGTGCAAAGAAATGCAAAGAGAAATTTGAGAATGTATACAAGTATCACAAGAGAACCAAAGAGGGTAGAACTGGAAAATCCGAAGGAAAAACCTACAAATTCTTTGATCAATTACAAGCCCTTGAGAATCATCATCACCACCAATTCAATTCACACCCTCCTCCAAAATCATCACAACAACCTCTCTTGCCAACAAACCCTATTGCTTTCTTCTCTCCTTCGACATTGCCATCAAGAACTGCTACCACAACCAACAACATTAACAACAACATGAACCAACTTTTCTCATCTCCATCATCCTCCACAGATTCAGATGAAGGGTTGGAAGAGAGGTACAAGAAGAAGAGGAAATGGAAGGACTACTTTAGGAGTCTAACTAGGCAAGTTCTTGCAAAGCAAGAGGAGATGCAAAATAGGTTCTTGGAAGCCATAGACAAAAGGGAGAGAGAAAGAGTAGCACAAGAAGAAGCTTGGAGGTTGAAAGAGATGGCGAGGATCGCCAACGAACACGACGTACTCGTGCAAGAGCGGTCAGCAGCTGCAGCCAAAGATGCAGCTGTCATCGCGCTCTTGCACAAGTTGTCTGATGGCGGCGACCACCAAACCCAATCGCCGCCGCCACAACCACCACCACAGAAACAACCAACACATACAATAATTAAGCCAAAGAATAATTCTTCTTCTTCTTCATCAAGATGGCCAAAGGGTGAAGTTCATGCATTGATAAGGCTAAGGACAAGTCTTGATTCAAAGTACATAGAAAATGGACCAAAAGGTCCATTATGGGAGGATATATCAGGTGGAATGCAGAGATTAGGGTACAACCGTAGTGCCAAGAGATGCAAAGAGAAGTGGGAGAATATTAACAAGTACTTCAAGAAAGTGAAGGAGAGTAACAGGCAAAGGCGTGAAGATAGCAAGACTTGTCCTTATTTTCATGAGCTTGAAGCTCTATACAAAGAAAAGAGTAACAACGGCAACAACTTTGGAAGTTTCCAGAACAACATGGAGCCGTTGATGGTGCAGCCTGAACAACAATGGAGGCCTCCACCTGATGAACCGGAAGAAGGTACTGCCAATGATAATAATAATGCATCAAATGAAGAAGAAGAGGAGTATGATGATGATGGTGTTGAAGAAGAAGATGAAGATAGTGTGGGAGAAGAAGAAGAAGGAGAAGGAGGATTAAAGCGTTATGAGATTGCGACAAATGTGAGTTGA 1299 0.4257 VFRDSTLKAPLWEEVSRKLGDLGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGKTYKFFDQLQALENHHHHQFNSHPPPKSSQQPLLPTNPIAFFSPSTLPSRTATTTNNINNNMNQLFSSPSSSTDSDEGLEERYKKKRKWKDYFRSLTRQVLAKQEEMQNRFLEAIDKRERERVAQEEAWRLKEMARIANEHDVLVQERSAAAAKDAAVIALLHKLSDGGDHQTQSPPPQPPPQKQPTHTIIKPKNNSSSSSSRWPKGEVHALIRLRTSLDSKYIENGPKGPLWEDISGGMQRLGYNRSAKRCKEKWENINKYFKKVKESNRQRREDSKTCPYFHELEALYKEKSNNGNNFGSFQNNMEPLMVQPEQQWRPPPDEPEEGTANDNNNASNEEEEEYDDDGVEEEDEDSVGEEEEGEGGLKRYEIATNVS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120977g00012 432 CDD GT1 258 322 - -
Stsc120977g00012 432 MobiDBLite consensus disorder prediction 366 432 - -
Stsc120977g00012 432 MobiDBLite consensus disorder prediction 391 416 - -
Stsc120977g00012 432 Pfam Myb/SANT-like DNA-binding domain 5 67 IPR044822 -
Stsc120977g00012 432 Pfam Myb/SANT-like DNA-binding domain 257 344 IPR044822 -
Stsc120977g00012 432 MobiDBLite consensus disorder prediction 243 260 - -
Stsc120977g00012 432 MobiDBLite consensus disorder prediction 222 261 - -
Stsc120977g00012 432 Gene3D - 1 44 - -
Stsc120977g00012 432 Gene3D - 259 320 - -
Stsc120977g00012 432 ProSiteProfiles Myb-like domain profile. 251 315 IPR001005 -
Stsc120977g00012 432 FunFam Trihelix transcription factor GT-2 259 320 - -
Stsc120977g00012 432 MobiDBLite consensus disorder prediction 107 129 - -
Stsc120977g00012 432 PANTHER FI21293P1 1 394 - -
Stsc120977g00012 432 MobiDBLite consensus disorder prediction 107 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120977g00012 Stsc-Chr120977 84352 86496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120977g00012 1 372 Trihelix Transcription Factor Family AT1G76890 48.124 6.17e-122 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc120977g00012 Myb_DNA-bind_4 5.3e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120977g00012 - - ahf:112802983 575.859