Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120977g00009 ATGTCCTTCCGAAGTATTGTTCGTGACGTGAGGGATGGGTTTGGAAGCTTATCAAGACGGGGTTTTGATGTAAGGCTTTCCGGCCATCACAGGGGCAAGTCGCATAGTTTGGTCCATGAGTTGCAGGATCAACTGCCGGTAATACAGAACAGCCAGTGGGCTAGTCTTCCACCTGAGCTTCTCCGTGAGGTTGTTAAAAGATTGGAAGCAGATGAGAGCACATGGCCTGCTCGTAAGCATGTGGTTTCGTGTGCCGGTGTGTGCAAGTCTTGGAGAGAAATGTGCAAAGAAGTCATTAACTGTCCTGAGTTCAGTGGGAAGATTACTTTCCCTGTGTCACTGAAGCAGCCTGGTTCTAGGGATGGACTCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTACCATCTATTCCTTTGTCTTAGTCCTGCTCTGCTTGTTGAAAATGGGAAGTTTCTTCTTTCGGCTAAACGTACCCGAAGGACAACCTGCACAGAGTATATTATATCAACAGATGCAGATAACATATCAAGATCTAGTAGCACTTATATTGGAAAATTGAGGTCAAACTTTCTTGGCACAAAATTTATAATTTATGATACACAGCCCCCCTGTAGCACTGCCCAGCTTTCGCCACCGGGCCGAAGCCGTAGGTTTTCGAAAAAGGTTTCTCCAAAGGTTCCTAGTGGCAGCTATAATATTGCTCGGATCACCTACGAGTTGAATGTCCTTGGTACTAGGGGTCCACGTAGGATGAACTGCACCATGCACACAATCCCTATGTCATCCCTCGAGCCCGGTGGCTGTGTCCCGGGCCAAGCAGAGCTACTTCCGCGTACCCTCGAGGATTCCTTCAGGAGCATATCCTTCTCATCAAAATCAATTGACCGGTCATCCGAGTTCAGCAGCGCCAGGTTCTCCGACATAGTCGGGCTAGGTAATGAAGGGGAAGAGAGTAAAGATAGACCTCTAGTTCTCAAGAACAAGGCGCCGAGATGGCACGAACAGCTTCAATGTTGGTGCCTCAACTTTAGGGGAAGGGTGACCGTCGCCTCCGTCAAGAATTTTCAGCTGATTGCCGCAACACAACCTCCGGCCGGCACACCTACACCATCGCAGCCGACACAGCCGTCTGACCATGACAAGATTATTCTTCAGTTTGGGAAAGTGGGCAAGGACATGTTCACTATGGACTATAGATACCCTCTTTCTGCATTTCAAGCTTTTGCCATCTGCTTGACTAGCTTTGACACAAAATTGGCATGTGAATAG 1278 0.4797 MSFRSIVRDVRDGFGSLSRRGFDVRLSGHHRGKSHSLVHELQDQLPVIQNSQWASLPPELLREVVKRLEADESTWPARKHVVSCAGVCKSWREMCKEVINCPEFSGKITFPVSLKQPGSRDGLIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISTDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPCSTAQLSPPGRSRRFSKKVSPKVPSGSYNIARITYELNVLGTRGPRRMNCTMHTIPMSSLEPGGCVPGQAELLPRTLEDSFRSISFSSKSIDRSSEFSSARFSDIVGLGNEGEESKDRPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAGTPTPSQPTQPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120977g00009 425 Gene3D Tubby Protein; Chain A 112 419 IPR025659 -
Stsc120977g00009 425 SUPERFAMILY Tubby C-terminal domain-like 102 425 IPR025659 -
Stsc120977g00009 425 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Stsc120977g00009 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Stsc120977g00009 425 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Stsc120977g00009 425 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Stsc120977g00009 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Stsc120977g00009 425 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Stsc120977g00009 425 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Stsc120977g00009 425 Pfam Tub family 114 420 IPR000007 -
Stsc120977g00009 425 PANTHER TUBBY-RELATED 41 423 - -
Stsc120977g00009 425 Gene3D - 48 100 - -
Stsc120977g00009 425 CDD F-box_AtTLP-like 53 97 - -
Stsc120977g00009 425 Pfam F-box domain 53 98 IPR001810 GO:0005515
Stsc120977g00009 425 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
Stsc120977g00009 425 FunFam Tubby-like F-box protein 110 425 - -
Stsc120977g00009 425 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Stsc120977g00009 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120977g00009 Stsc-Chr120977 54375 58106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120977g00009 1 425 TUB Transcription Factor Family AT1G76900 67.253 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc120977g00009 Tub 6.2e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120977g00009 K19600 - rcu:8283226 705.286